Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46768 * 2 1 4 4 N 1.46893 * 109.47216 * 119.99719 * 2 1 3 5 5 C 1.50701 * 109.47114 * 239.99865 * 2 1 3 6 6 N 1.30811 * 125.89736 * 285.18414 * 5 2 1 7 7 N 1.40053 * 108.36149 * 180.22138 * 6 5 2 8 8 C 1.46499 * 126.00041 * 179.77987 * 7 6 5 9 9 C 1.35196 * 108.00348 * 359.75899 * 7 6 5 10 10 C 1.35827 * 107.64868 * 359.97438 * 9 7 6 11 11 O 1.36008 * 126.11251 * 179.97438 * 10 9 7 12 12 C 1.34794 * 117.00365 * 0.03347 * 11 10 9 13 13 H 1.07999 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.38628 * 120.00283 * 179.97438 * 12 11 10 15 15 N 1.31581 * 119.99753 * 0.27845 * 14 12 11 16 16 Si 1.86800 * 119.99735 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00467 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00222 * 16 14 12 20 20 H 1.08999 * 109.46768 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46825 * 300.00336 * 1 2 3 22 22 H 1.09002 * 109.47282 * 59.99828 * 1 2 3 23 23 H 1.00903 * 111.00559 * 176.04271 * 4 2 1 24 24 H 1.00899 * 111.00333 * 300.00367 * 4 2 1 25 25 H 1.09006 * 109.47100 * 269.97581 * 8 7 6 26 26 H 1.09004 * 109.47060 * 29.97272 * 8 7 6 27 27 H 1.08998 * 109.47787 * 149.97925 * 8 7 6 28 28 H 1.08006 * 126.17325 * 179.97438 * 9 7 6 29 29 H 0.97001 * 120.00516 * 359.71649 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0324 -0.7104 -1.2305 6 7 2.0263 -2.0039 -1.4255 7 7 2.5804 -2.2627 -2.6854 8 6 2.7638 -3.5842 -3.2905 9 6 2.9158 -1.0788 -3.2456 10 6 2.5834 -0.0984 -2.3663 11 8 2.7593 1.2375 -2.5512 12 6 3.3149 1.6262 -3.7162 13 1 3.5986 0.8882 -4.4519 14 6 3.5223 2.9732 -3.9699 15 7 3.1817 3.8720 -3.0713 16 14 4.2929 3.5117 -5.5841 17 1 3.4413 3.0608 -6.7139 18 1 4.4049 4.9923 -5.6095 19 1 5.6446 2.9102 -5.7123 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 3.0262 -0.7626 1.1909 24 1 1.6962 -0.2349 2.0385 25 1 3.7434 -3.9763 -3.0170 26 1 1.9883 -4.2599 -2.9295 27 1 2.6962 -3.4999 -4.3751 28 1 3.3667 -0.9382 -4.2169 29 1 2.7818 3.5924 -2.2329 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067823.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = 45.296154 kcal Electronic energy + Delta-G solvation = -13985.553981 eV Core-core repulsion = 11525.257717 eV Total energy + Delta-G solvation = -2460.296264 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47441 -36.87795 -35.57804 -32.26075 -31.61150 -28.68904 -28.35358 -26.11138 -24.36253 -22.27741 -20.52722 -18.82731 -17.81771 -16.77193 -15.34277 -14.99898 -14.84318 -14.51333 -13.85171 -13.69900 -13.58854 -13.12555 -12.56985 -12.37830 -11.76833 -11.49415 -11.41258 -11.14120 -10.78687 -10.48737 -10.26150 -10.00942 -9.45156 -8.60772 -8.55736 -8.34448 -6.94364 -6.57105 -3.84578 2.54748 3.13146 3.30115 3.31703 3.51788 3.69128 4.25747 4.82945 4.96321 5.26999 5.28807 5.45205 5.49622 5.63085 5.73474 5.76017 5.84933 6.11828 6.21415 6.51354 6.59813 6.69036 7.32412 7.43274 7.53404 7.74103 7.77763 8.44847 8.60760 9.15368 9.88771 10.89275 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.010221 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.022331 B = 2738.839263 C = 3500.100347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.178 3.822 3 H 0.058 0.942 4 N -0.838 5.838 5 C 0.044 3.956 6 N -0.259 5.259 7 N -0.383 5.383 8 C 0.119 3.881 9 C -0.080 4.080 10 C 0.024 3.976 11 O -0.208 6.208 12 C -0.460 4.460 13 H 0.067 0.933 14 C 0.004 3.996 15 N -0.896 5.896 16 Si 1.094 2.906 17 H -0.285 1.285 18 H -0.275 1.275 19 H -0.285 1.285 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.341 0.659 24 H 0.337 0.663 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 -9.069 1.414 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.076 0.924 4 N -0.369 5.369 5 C -0.123 4.123 6 N -0.084 5.084 7 N -0.175 5.175 8 C -0.024 4.024 9 C -0.221 4.221 10 C -0.034 4.034 11 O -0.114 6.114 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.531 5.531 16 Si 0.920 3.080 17 H -0.211 1.211 18 H -0.200 1.200 19 H -0.211 1.211 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.153 0.847 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.183 0.817 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.387 -9.333 0.783 9.468 hybrid contribution 0.395 0.049 0.361 0.537 sum -0.992 -9.284 1.144 9.407 Atomic orbital electron populations 1.21743 0.93855 1.02320 1.01454 1.19476 0.95019 0.93896 0.85125 0.92446 1.58688 1.16333 1.58389 1.03462 1.21483 1.04474 0.90390 0.95975 1.77041 1.18674 1.15168 0.97512 1.47519 1.50974 1.05365 1.13617 1.21557 1.02082 0.81173 0.97550 1.21867 1.13274 0.84938 1.02041 1.18966 1.04029 0.86135 0.94247 1.83637 1.74764 1.14343 1.38645 1.21879 1.43492 0.94843 0.93493 0.91540 1.26304 0.98063 0.90035 1.05532 1.70579 1.38194 1.35741 1.08588 0.83122 0.75759 0.76830 0.72320 1.21123 1.19983 1.21139 0.91899 0.92744 0.92009 0.84667 0.85066 0.91917 0.90214 0.90357 0.81742 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.47 37.16 0.35 -1.92 15 2 C 0.18 3.36 3.85 -68.87 -0.26 3.10 15 3 H 0.06 1.17 8.07 -51.93 -0.42 0.75 15 4 N -0.84 -13.37 9.23 -5.66 -0.05 -13.42 15 5 C 0.04 0.98 6.00 -82.25 -0.49 0.49 15 6 N -0.26 -5.51 12.55 33.75 0.42 -5.08 15 7 N -0.38 -7.51 4.02 -67.96 -0.27 -7.78 15 8 C 0.12 1.58 11.47 59.85 0.69 2.27 15 9 C -0.08 -1.79 10.55 -16.93 -0.18 -1.97 15 10 C 0.02 0.60 6.91 -39.67 -0.27 0.33 15 11 O -0.21 -6.00 9.18 -0.66 -0.01 -6.01 15 12 C -0.46 -13.29 9.62 30.88 0.30 -12.99 15 13 H 0.07 1.81 5.94 -52.49 -0.31 1.50 15 14 C 0.00 0.10 5.49 -17.51 -0.10 0.01 15 15 N -0.90 -27.43 13.70 55.48 0.76 -26.67 15 16 Si 1.09 24.40 29.92 -169.99 -5.09 19.31 15 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 19 H -0.29 -5.98 7.11 56.52 0.40 -5.58 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 23 H 0.34 5.41 8.99 -39.29 -0.35 5.05 15 24 H 0.34 4.36 9.04 -39.29 -0.36 4.01 15 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.17 3.45 6.71 -52.48 -0.35 3.10 15 29 H 0.28 8.71 7.97 -40.82 -0.33 8.38 15 LS Contribution 258.84 15.07 3.90 3.90 Total: -1.00 -33.83 258.84 -3.75 -37.58 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.45 Total: 8.86 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 0.03 Total: -10.69 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.86 Total: -52.96 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.01 Total: -6.01 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.83 -3.75 -37.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067823.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.879 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds