Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46768 * 2 1 4 4 N 1.46893 * 109.47216 * 119.99719 * 2 1 3 5 5 C 1.50701 * 109.47114 * 239.99865 * 2 1 3 6 6 N 1.30811 * 125.89736 * 285.18414 * 5 2 1 7 7 N 1.40053 * 108.36149 * 180.22138 * 6 5 2 8 8 C 1.46499 * 126.00041 * 179.77987 * 7 6 5 9 9 C 1.35196 * 108.00348 * 359.75899 * 7 6 5 10 10 C 1.35827 * 107.64868 * 359.97438 * 9 7 6 11 11 O 1.36008 * 126.11251 * 179.97438 * 10 9 7 12 12 C 1.34794 * 117.00365 * 0.03347 * 11 10 9 13 13 H 1.07999 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.38628 * 120.00283 * 179.97438 * 12 11 10 15 15 N 1.31581 * 119.99753 * 0.27845 * 14 12 11 16 16 Si 1.86800 * 119.99735 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00467 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00222 * 16 14 12 20 20 H 1.08999 * 109.46768 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46825 * 300.00336 * 1 2 3 22 22 H 1.09002 * 109.47282 * 59.99828 * 1 2 3 23 23 H 1.00903 * 111.00559 * 176.04271 * 4 2 1 24 24 H 1.00899 * 111.00333 * 300.00367 * 4 2 1 25 25 H 1.09006 * 109.47100 * 269.97581 * 8 7 6 26 26 H 1.09004 * 109.47060 * 29.97272 * 8 7 6 27 27 H 1.08998 * 109.47787 * 149.97925 * 8 7 6 28 28 H 1.08006 * 126.17325 * 179.97438 * 9 7 6 29 29 H 0.97001 * 120.00516 * 359.71649 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0324 -0.7104 -1.2305 6 7 2.0263 -2.0039 -1.4255 7 7 2.5804 -2.2627 -2.6854 8 6 2.7638 -3.5842 -3.2905 9 6 2.9158 -1.0788 -3.2456 10 6 2.5834 -0.0984 -2.3663 11 8 2.7593 1.2375 -2.5512 12 6 3.3149 1.6262 -3.7162 13 1 3.5986 0.8882 -4.4519 14 6 3.5223 2.9732 -3.9699 15 7 3.1817 3.8720 -3.0713 16 14 4.2929 3.5117 -5.5841 17 1 3.4413 3.0608 -6.7139 18 1 4.4049 4.9923 -5.6095 19 1 5.6446 2.9102 -5.7123 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 3.0262 -0.7626 1.1909 24 1 1.6962 -0.2349 2.0385 25 1 3.7434 -3.9763 -3.0170 26 1 1.9883 -4.2599 -2.9295 27 1 2.6962 -3.4999 -4.3751 28 1 3.3667 -0.9382 -4.2169 29 1 2.7818 3.5924 -2.2329 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067823.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = 18.570069 kcal Electronic energy + Delta-G solvation = -13986.712911 eV Core-core repulsion = 11525.257717 eV Total energy + Delta-G solvation = -2461.455194 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.19300 -38.86529 -37.03222 -34.21493 -33.22569 -30.20379 -29.93061 -27.69118 -26.35824 -23.76260 -22.36224 -20.51057 -19.77043 -18.50690 -16.87734 -16.65160 -16.48088 -16.08810 -15.63906 -15.41098 -15.04610 -14.85954 -14.31772 -13.53102 -13.31309 -12.92620 -12.86888 -12.66191 -12.45499 -12.33553 -11.94304 -11.77553 -11.44183 -10.67413 -10.16487 -9.72118 -8.81673 -8.80851 -6.07757 0.86069 1.51456 1.59793 1.66320 1.81717 1.88484 2.44747 3.13144 3.33633 3.50855 3.74749 3.99175 4.13322 4.29235 4.32216 4.45622 4.65744 4.71841 4.74302 4.95443 4.97885 5.19393 5.36979 5.55290 6.04854 6.16161 6.35258 6.57017 6.74337 7.02126 7.83098 8.65889 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.010221 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.022331 B = 2738.839263 C = 3500.100347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 H 0.032 0.968 4 N -0.829 5.829 5 C 0.037 3.963 6 N -0.263 5.263 7 N -0.372 5.372 8 C 0.103 3.897 9 C -0.062 4.062 10 C -0.032 4.032 11 O -0.247 6.247 12 C -0.472 4.472 13 H 0.078 0.922 14 C -0.052 4.052 15 N -0.927 5.927 16 Si 1.145 2.855 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.262 1.262 20 H 0.064 0.936 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.342 0.658 24 H 0.355 0.645 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.179 0.821 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -10.980 0.475 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.050 0.950 4 N -0.361 5.361 5 C -0.129 4.129 6 N -0.089 5.089 7 N -0.163 5.163 8 C -0.036 4.036 9 C -0.205 4.205 10 C -0.089 4.089 11 O -0.155 6.155 12 C -0.549 4.549 13 H 0.096 0.904 14 C -0.246 4.246 15 N -0.565 5.565 16 Si 0.962 3.038 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.187 1.187 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.062 0.938 23 H 0.154 0.846 24 H 0.170 0.830 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.196 0.804 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.102 -11.337 -0.123 11.391 hybrid contribution 0.286 0.384 0.688 0.838 sum -0.816 -10.953 0.565 10.998 Atomic orbital electron populations 1.21666 0.92181 1.02526 1.02107 1.19435 0.96296 0.92450 0.85422 0.95013 1.58644 1.16412 1.57837 1.03223 1.21859 1.04107 0.90569 0.96393 1.77018 1.19045 1.14421 0.98401 1.48123 1.48727 1.06660 1.12770 1.22122 1.04025 0.78399 0.99085 1.22128 1.11039 0.85542 1.01809 1.19566 1.07093 0.85558 0.96662 1.83602 1.76269 1.16639 1.38984 1.22338 1.43067 0.95568 0.93963 0.90385 1.28206 0.97817 0.90251 1.08327 1.70718 1.40807 1.36258 1.08683 0.82565 0.76270 0.76422 0.68557 1.18674 1.20232 1.18705 0.91735 0.89753 0.93755 0.84623 0.82983 0.89677 0.88382 0.87596 0.80408 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.47 71.98 0.68 -3.51 15 2 C 0.18 6.78 3.85 44.17 0.17 6.95 15 3 H 0.03 1.37 8.07 -2.39 -0.02 1.35 15 4 N -0.83 -25.72 9.23 -171.81 -1.59 -27.31 15 5 C 0.04 1.65 6.00 43.21 0.26 1.91 15 6 N -0.26 -10.82 12.55 -47.13 -0.59 -11.41 15 7 N -0.37 -13.74 4.02 -368.92 -1.48 -15.22 15 8 C 0.10 2.35 11.47 127.77 1.47 3.82 15 9 C -0.06 -2.69 10.55 83.62 0.88 -1.81 15 10 C -0.03 -1.65 6.91 22.21 0.15 -1.50 15 11 O -0.25 -14.81 9.18 -25.27 -0.23 -15.04 15 12 C -0.47 -27.77 9.62 67.91 0.65 -27.12 15 13 H 0.08 4.22 5.94 -2.91 -0.02 4.20 15 14 C -0.05 -2.99 5.49 84.82 0.47 -2.53 15 15 N -0.93 -58.75 13.70 21.61 0.30 -58.46 15 16 Si 1.15 48.53 29.92 68.60 2.05 50.58 15 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 15 20 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.08 2.24 8.14 -2.39 -0.02 2.23 15 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.34 10.65 8.99 -89.69 -0.81 9.84 15 24 H 0.36 8.71 9.04 -89.69 -0.81 7.90 15 25 H 0.08 1.64 8.14 -2.38 -0.02 1.62 15 26 H 0.10 1.94 8.14 -2.38 -0.02 1.92 15 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 28 H 0.18 7.13 6.71 -2.91 -0.02 7.11 15 29 H 0.26 17.00 7.97 -92.71 -0.74 16.26 15 Total: -1.00 -75.19 258.84 2.78 -72.41 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.41 Total: 28.24 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.73 Total: -23.79 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -3.36 Total: -112.40 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.23 Total: -15.04 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Total: -75.19 2.78 -72.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067823.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.983 kcal (2) G-P(sol) polarization free energy of solvation -75.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds