Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39021 * 126.76840 * 2 1 4 4 C 1.41486 * 126.02493 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99984 * 0.25826 * 4 3 2 6 6 C 1.39740 * 120.00243 * 180.25502 * 4 3 2 7 7 N 1.30979 * 119.99709 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47157 * 90.00064 * 8 6 4 10 10 H 1.48493 * 109.47351 * 210.00015 * 8 6 4 11 11 H 1.48501 * 109.47100 * 330.00397 * 8 6 4 12 12 N 1.34841 * 107.95258 * 180.26783 * 3 2 1 13 13 N 1.28668 * 109.64111 * 359.75548 * 12 3 2 14 14 N 1.35012 * 126.77348 * 179.85560 * 2 1 3 15 15 C 1.46506 * 126.49310 * 0.02562 * 14 2 1 16 16 C 1.52999 * 109.46967 * 269.70990 * 15 14 2 17 17 C 1.52996 * 109.47188 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47050 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.46935 * 270.13791 * 1 2 3 20 20 H 1.09003 * 109.46932 * 30.13926 * 1 2 3 21 21 H 1.08999 * 109.47055 * 150.14354 * 1 2 3 22 22 H 0.96998 * 119.99788 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.46947 * 29.70408 * 15 14 2 24 24 H 1.08997 * 109.47271 * 149.70925 * 15 14 2 25 25 H 1.09011 * 109.46854 * 299.99834 * 16 15 14 26 26 H 1.09005 * 109.47366 * 59.99260 * 16 15 14 27 27 H 1.08994 * 109.46779 * 299.99451 * 17 16 15 28 28 H 1.08997 * 109.47218 * 59.99832 * 17 16 15 29 29 H 0.96701 * 113.99584 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3392 1.1136 0.0000 4 6 1.9207 2.4652 0.0005 5 1 0.8675 2.7043 0.0052 6 6 2.8699 3.4906 -0.0049 7 7 4.1472 3.2006 -0.0110 8 14 2.3173 5.2750 -0.0035 9 1 2.1778 5.7489 1.3969 10 1 3.3256 6.1060 -0.7091 11 1 1.0092 5.3886 -0.6971 12 7 3.6155 0.6788 -0.0060 13 7 3.6341 -0.6078 -0.0045 14 7 2.3153 -1.0815 0.0027 15 6 1.8935 -2.4845 0.0057 16 6 1.7531 -2.9717 1.4493 17 6 1.3133 -4.4370 1.4525 18 8 1.1828 -4.8922 2.8007 19 1 -0.3633 0.0025 1.0277 20 1 -0.3633 0.8888 -0.5160 21 1 -0.3633 -0.8913 -0.5116 22 1 4.8061 3.9124 -0.0152 23 1 0.9343 -2.5765 -0.5036 24 1 2.6388 -3.0891 -0.5110 25 1 2.7125 -2.8796 1.9587 26 1 1.0079 -2.3670 1.9661 27 1 0.3542 -4.5295 0.9430 28 1 2.0589 -5.0414 0.9359 29 1 0.9063 -5.8156 2.8790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = 26.268177 kcal Electronic energy + Delta-G solvation = -13700.520239 eV Core-core repulsion = 11239.398860 eV Total energy + Delta-G solvation = -2461.121379 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94769 -37.22759 -34.51043 -33.14059 -31.41977 -30.00244 -27.09824 -25.33583 -24.34925 -21.76114 -20.24674 -19.07819 -17.53271 -16.96155 -15.68227 -15.10513 -14.85057 -14.19358 -13.64348 -13.47920 -12.84982 -12.55501 -12.31260 -11.87612 -11.75981 -11.23948 -11.09373 -11.05372 -10.90833 -10.63437 -10.24175 -10.06074 -9.69909 -9.26762 -8.84946 -8.41110 -7.35171 -6.32732 -4.12086 2.82858 3.18702 3.23240 3.26193 3.54940 4.16543 4.27574 4.35339 4.89937 5.12229 5.26590 5.31201 5.54445 5.56537 5.58622 5.96170 6.01029 6.08578 6.31236 6.37676 6.62926 6.95039 7.17134 7.44353 7.49826 7.56192 8.19579 8.46374 8.86773 9.12714 10.24250 10.64281 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.058833 B = 0.007000 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.810718 B = 3998.767716 C = 4202.026246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.119 4.119 3 C 0.151 3.849 4 C -0.452 4.452 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.777 5.777 8 Si 0.907 3.093 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.265 1.265 12 N -0.227 5.227 13 N -0.134 5.134 14 N -0.378 5.378 15 C 0.144 3.856 16 C -0.136 4.136 17 C 0.081 3.919 18 O -0.574 6.574 19 H 0.051 0.949 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.272 0.728 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -10.458 0.550 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.250 4.250 3 C 0.021 3.979 4 C -0.488 4.488 5 H 0.099 0.901 6 C -0.147 4.147 7 N -0.404 5.404 8 Si 0.733 3.267 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.189 1.189 12 N -0.099 5.099 13 N -0.110 5.110 14 N -0.175 5.175 15 C 0.019 3.981 16 C -0.175 4.175 17 C 0.003 3.997 18 O -0.379 6.379 19 H 0.069 0.931 20 H 0.090 0.910 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.684 -10.145 0.648 11.647 hybrid contribution -1.470 0.383 -0.114 1.523 sum -7.153 -9.763 0.534 12.115 Atomic orbital electron populations 1.19791 0.88795 1.01122 1.00577 1.21495 0.93647 0.87483 1.22419 1.19004 0.85934 0.93401 0.99575 1.18530 0.93877 0.87592 1.48769 0.90097 1.25789 0.94614 1.00715 0.93549 1.70018 1.00775 1.33762 1.35828 0.86343 0.79154 0.82440 0.78784 1.19839 1.20553 1.18944 1.75070 1.20180 0.99555 1.15076 1.81488 0.96704 1.07237 1.25578 1.49421 1.06960 1.04525 1.56546 1.21135 1.00570 0.80269 0.96081 1.21911 1.03726 0.94358 0.97545 1.22071 0.99273 0.95214 0.83163 1.86517 1.91896 1.32359 1.27081 0.93066 0.90999 0.93937 0.91788 0.90131 0.89734 0.90408 0.90661 0.93514 0.93414 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.81 9.94 36.01 0.36 -0.45 15 2 C -0.12 -2.86 7.11 -80.90 -0.58 -3.44 15 3 C 0.15 4.30 6.72 -85.02 -0.57 3.73 15 4 C -0.45 -12.62 9.11 -37.78 -0.34 -12.97 15 5 H 0.08 2.08 7.31 -52.49 -0.38 1.70 15 6 C 0.07 1.97 5.49 -17.35 -0.10 1.87 15 7 N -0.78 -22.57 11.92 55.54 0.66 -21.90 15 8 Si 0.91 19.95 29.56 -169.99 -5.02 14.92 15 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 12 N -0.23 -6.82 10.55 32.05 0.34 -6.48 15 13 N -0.13 -3.62 13.74 60.35 0.83 -2.79 15 14 N -0.38 -8.57 3.63 -56.17 -0.20 -8.78 15 15 C 0.14 2.30 6.30 -4.04 -0.03 2.28 15 16 C -0.14 -2.04 5.91 -26.73 -0.16 -2.20 15 17 C 0.08 0.89 7.05 37.16 0.26 1.16 15 18 O -0.57 -6.72 13.66 -35.23 -0.48 -7.20 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.07 1.32 7.57 -51.93 -0.39 0.92 15 21 H 0.04 0.65 7.19 -51.93 -0.37 0.28 15 22 H 0.27 7.22 8.30 -40.82 -0.34 6.88 15 23 H 0.08 1.08 7.16 -51.93 -0.37 0.71 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.08 1.34 8.14 -51.92 -0.42 0.91 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 15 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 15 29 H 0.38 2.37 9.12 45.56 0.42 2.78 15 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -34.57 257.52 -3.93 -38.50 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.78 Total: -0.12 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.15 Total: -10.02 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 1.63 Total: -39.95 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.48 Total: -7.20 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.57 -3.93 -38.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.764 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds