Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39021 * 126.76840 * 2 1 4 4 C 1.41486 * 126.02493 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99984 * 0.25826 * 4 3 2 6 6 C 1.39740 * 120.00243 * 180.25502 * 4 3 2 7 7 N 1.30979 * 119.99709 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47157 * 90.00064 * 8 6 4 10 10 H 1.48493 * 109.47351 * 210.00015 * 8 6 4 11 11 H 1.48501 * 109.47100 * 330.00397 * 8 6 4 12 12 N 1.34841 * 107.95258 * 180.26783 * 3 2 1 13 13 N 1.28668 * 109.64111 * 359.75548 * 12 3 2 14 14 N 1.35012 * 126.77348 * 179.85560 * 2 1 3 15 15 C 1.46506 * 126.49310 * 0.02562 * 14 2 1 16 16 C 1.52999 * 109.46967 * 269.70990 * 15 14 2 17 17 C 1.52996 * 109.47188 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47050 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.46935 * 270.13791 * 1 2 3 20 20 H 1.09003 * 109.46932 * 30.13926 * 1 2 3 21 21 H 1.08999 * 109.47055 * 150.14354 * 1 2 3 22 22 H 0.96998 * 119.99788 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.46947 * 29.70408 * 15 14 2 24 24 H 1.08997 * 109.47271 * 149.70925 * 15 14 2 25 25 H 1.09011 * 109.46854 * 299.99834 * 16 15 14 26 26 H 1.09005 * 109.47366 * 59.99260 * 16 15 14 27 27 H 1.08994 * 109.46779 * 299.99451 * 17 16 15 28 28 H 1.08997 * 109.47218 * 59.99832 * 17 16 15 29 29 H 0.96701 * 113.99584 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3392 1.1136 0.0000 4 6 1.9207 2.4652 0.0005 5 1 0.8675 2.7043 0.0052 6 6 2.8699 3.4906 -0.0049 7 7 4.1472 3.2006 -0.0110 8 14 2.3173 5.2750 -0.0035 9 1 2.1778 5.7489 1.3969 10 1 3.3256 6.1060 -0.7091 11 1 1.0092 5.3886 -0.6971 12 7 3.6155 0.6788 -0.0060 13 7 3.6341 -0.6078 -0.0045 14 7 2.3153 -1.0815 0.0027 15 6 1.8935 -2.4845 0.0057 16 6 1.7531 -2.9717 1.4493 17 6 1.3133 -4.4370 1.4525 18 8 1.1828 -4.8922 2.8007 19 1 -0.3633 0.0025 1.0277 20 1 -0.3633 0.8888 -0.5160 21 1 -0.3633 -0.8913 -0.5116 22 1 4.8061 3.9124 -0.0152 23 1 0.9343 -2.5765 -0.5036 24 1 2.6388 -3.0891 -0.5110 25 1 2.7125 -2.8796 1.9587 26 1 1.0079 -2.3670 1.9661 27 1 0.3542 -4.5295 0.9430 28 1 2.0589 -5.0414 0.9359 29 1 0.9063 -5.8156 2.8790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = -1.803871 kcal Electronic energy + Delta-G solvation = -13701.737535 eV Core-core repulsion = 11239.398860 eV Total energy + Delta-G solvation = -2462.338674 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.87165 -38.17381 -36.04768 -35.03087 -33.08426 -31.67545 -28.86729 -26.73123 -26.24756 -22.99876 -22.14293 -20.80734 -19.12062 -18.21021 -16.91006 -16.82829 -16.48468 -15.95834 -14.99496 -14.71974 -14.50166 -14.15148 -13.68153 -13.44526 -13.33118 -12.84346 -12.77902 -12.58643 -12.25269 -12.14876 -12.00589 -11.60433 -11.18460 -10.88854 -10.79974 -10.29146 -9.35817 -8.29772 -6.18867 0.96826 1.44579 1.45611 1.59486 1.96698 2.32837 2.34720 3.33088 3.52745 3.72472 4.07594 4.25485 4.25806 4.33293 4.39983 4.51030 4.58697 4.90041 4.92125 4.99371 5.08842 5.22490 5.26796 5.53417 5.62342 6.39808 6.44447 6.88885 6.94015 7.09239 8.26989 8.70218 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.058833 B = 0.007000 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.810718 B = 3998.767716 C = 4202.026246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.089 4.089 3 C 0.098 3.902 4 C -0.482 4.482 5 H 0.095 0.905 6 C 0.017 3.983 7 N -0.831 5.831 8 Si 0.989 3.011 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.249 1.249 12 N -0.283 5.283 13 N -0.177 5.177 14 N -0.362 5.362 15 C 0.130 3.870 16 C -0.130 4.130 17 C 0.089 3.911 18 O -0.600 6.600 19 H 0.070 0.930 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.272 0.728 23 H 0.122 0.878 24 H 0.101 0.899 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -11.704 0.225 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.224 4.224 3 C -0.035 4.035 4 C -0.519 4.519 5 H 0.113 0.887 6 C -0.197 4.197 7 N -0.459 5.459 8 Si 0.811 3.189 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.173 1.173 12 N -0.152 5.152 13 N -0.152 5.152 14 N -0.156 5.156 15 C 0.009 3.991 16 C -0.169 4.169 17 C 0.010 3.990 18 O -0.409 6.409 19 H 0.088 0.912 20 H 0.094 0.906 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.140 0.860 24 H 0.120 0.880 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.595 -11.491 0.326 14.354 hybrid contribution -0.708 0.492 0.016 0.863 sum -9.303 -10.999 0.343 14.410 Atomic orbital electron populations 1.20016 0.84434 1.03445 1.02430 1.22424 0.96100 0.86689 1.17215 1.19686 0.86584 0.95313 1.01872 1.18962 0.94786 0.88189 1.49958 0.88666 1.26826 0.94381 1.05791 0.92656 1.70194 1.02310 1.35244 1.38160 0.85103 0.79073 0.75794 0.78966 1.19262 1.20384 1.17262 1.75015 1.21851 1.00866 1.17500 1.81348 0.98788 1.06564 1.28526 1.49937 1.05806 1.06970 1.52931 1.21737 1.03019 0.76739 0.97624 1.21787 1.01666 0.97507 0.95924 1.21996 1.01325 0.92224 0.83406 1.86444 1.92243 1.34658 1.27543 0.91187 0.90629 0.89685 0.91821 0.85962 0.88028 0.93781 0.92020 0.90371 0.91590 0.74804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.47 9.94 71.24 0.71 -0.77 15 2 C -0.09 -4.16 7.11 42.26 0.30 -3.86 15 3 C 0.10 5.73 6.72 39.67 0.27 6.00 15 4 C -0.48 -27.42 9.11 23.43 0.21 -27.21 15 5 H 0.10 4.87 7.31 -2.91 -0.02 4.85 15 6 C 0.02 0.93 5.49 85.18 0.47 1.40 15 7 N -0.83 -50.52 11.92 21.80 0.26 -50.26 15 8 Si 0.99 41.63 29.56 68.60 2.03 43.66 15 9 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 15 11 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 12 N -0.28 -17.79 10.55 -52.52 -0.55 -18.35 15 13 N -0.18 -9.86 13.74 37.02 0.51 -9.35 15 14 N -0.36 -16.05 3.63 -331.63 -1.20 -17.26 15 15 C 0.13 3.77 6.30 86.38 0.54 4.32 15 16 C -0.13 -3.60 5.91 30.59 0.18 -3.42 15 17 C 0.09 1.61 7.05 71.98 0.51 2.11 15 18 O -0.60 -12.29 13.66 -148.98 -2.04 -14.32 15 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.07 2.51 7.57 -2.39 -0.02 2.50 15 21 H 0.08 2.12 7.19 -2.39 -0.02 2.11 15 22 H 0.27 15.23 8.30 -92.71 -0.77 14.46 15 23 H 0.12 2.60 7.16 -2.39 -0.02 2.58 15 24 H 0.10 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.04 1.50 8.14 -2.38 -0.02 1.49 15 26 H 0.06 1.87 8.14 -2.38 -0.02 1.85 15 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 15 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 15 29 H 0.40 3.69 9.12 -74.06 -0.68 3.01 15 Total: -1.00 -80.40 257.52 2.68 -77.72 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.49 Total: 9.58 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.19 Total: -21.43 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -0.99 Total: -95.21 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -2.04 Total: -14.32 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -80.40 2.68 -77.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.918 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds