Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47124 * 274.98088 * 3 2 1 5 5 H 1.48496 * 109.47212 * 34.98152 * 3 2 1 6 6 H 1.48503 * 109.47067 * 154.98378 * 3 2 1 7 7 C 1.40051 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00444 * 186.04459 * 7 2 1 9 9 C 1.46382 * 119.99978 * 6.04936 * 7 2 1 10 10 O 1.21685 * 119.99515 * 353.61381 * 9 7 2 11 11 N 1.34775 * 120.00314 * 173.62131 * 9 7 2 12 12 C 1.47568 * 125.65776 * 359.97217 * 11 9 7 13 13 C 1.55204 * 105.04903 * 203.89655 * 12 11 9 14 14 C 1.53584 * 101.35957 * 324.64429 * 13 12 11 15 15 C 1.51717 * 116.90270 * 261.68914 * 14 13 12 16 16 O 1.43665 * 88.05266 * 218.01467 * 15 14 13 17 17 C 1.43665 * 88.75656 * 26.63918 * 16 15 14 18 18 C 1.47436 * 125.66036 * 179.97438 * 11 9 7 19 19 H 0.97002 * 119.99774 * 0.02562 * 1 2 3 20 20 H 1.09008 * 110.32344 * 322.78881 * 12 11 9 21 21 H 1.08998 * 110.32817 * 84.89959 * 12 11 9 22 22 H 1.09007 * 111.04545 * 206.62626 * 13 12 11 23 23 H 1.08999 * 111.05182 * 82.66847 * 13 12 11 24 24 H 1.09000 * 113.46048 * 103.21691 * 15 14 13 25 25 H 1.09005 * 113.45940 * 332.81113 * 15 14 13 26 26 H 1.08999 * 113.45423 * 88.15408 * 17 16 15 27 27 H 1.08991 * 113.45593 * 218.56465 * 17 16 15 28 28 H 1.08994 * 110.00335 * 58.41100 * 18 11 9 29 29 H 1.09005 * 109.99804 * 297.06250 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.0990 9 6 1.2812 -2.4771 -0.1325 10 8 0.0644 -2.4835 -0.1266 11 7 1.9606 -3.6339 -0.2613 12 6 3.4297 -3.7707 -0.2845 13 6 3.6989 -5.0994 -1.0402 14 6 2.5139 -5.9580 -0.5739 15 6 2.7759 -6.9317 0.5598 16 8 1.9107 -7.8648 -0.1071 17 6 2.2387 -7.2301 -1.3535 18 6 1.3593 -4.9727 -0.4025 19 1 -0.4850 0.8401 -0.0004 20 1 3.8796 -2.9336 -0.8184 21 1 3.8210 -3.8252 0.7314 22 1 4.6470 -5.5401 -0.7317 23 1 3.6721 -4.9483 -2.1193 24 1 2.3897 -6.5926 1.5210 25 1 3.8124 -7.2644 0.6153 26 1 3.1253 -7.6461 -1.8321 27 1 1.3915 -7.1470 -2.0342 28 1 0.7125 -5.0003 -1.2794 29 1 0.7869 -5.2205 0.4914 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347867901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -42.402771 kcal Electronic energy + Delta-G solvation = -14156.287713 eV Core-core repulsion = 11659.895787 eV Total energy + Delta-G solvation = -2496.391926 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12703 -37.62916 -35.26224 -32.52452 -30.71653 -28.68246 -26.72364 -26.29027 -24.55670 -22.15054 -19.52064 -18.61224 -16.79948 -16.13956 -15.87073 -15.52050 -15.06443 -14.56015 -14.13545 -13.59896 -12.99670 -12.60686 -12.18864 -11.91789 -11.65958 -11.33048 -11.12113 -11.09378 -10.87504 -10.50756 -10.23656 -10.18874 -10.09111 -9.66524 -8.87432 -7.66574 -7.23795 -6.23223 -4.66823 3.12020 3.19065 3.22701 3.92048 4.08710 4.22248 4.55018 4.59689 4.67161 5.11280 5.27256 5.29786 5.55792 5.69459 5.73950 5.76573 5.82478 6.04882 6.06956 6.12103 6.34416 6.41798 6.47171 6.59383 7.32487 7.41503 8.07134 8.37958 8.99267 9.45799 10.54650 10.73396 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064389 B = 0.007904 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.750313 B = 3541.525494 C = 3816.475469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.576 6.576 11 N -0.646 5.646 12 C 0.120 3.880 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.045 3.955 16 O -0.373 6.373 17 C 0.045 3.955 18 C 0.147 3.853 19 H 0.269 0.731 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -8.735 -1.836 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.458 6.458 11 N -0.387 5.387 12 C -0.005 4.005 13 C -0.162 4.162 14 C -0.143 4.143 15 C -0.032 4.032 16 O -0.291 6.291 17 C -0.032 4.032 18 C 0.023 3.977 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.915 -8.761 -1.723 11.932 hybrid contribution 0.642 0.852 -0.059 1.068 sum 8.557 -7.908 -1.782 11.787 Atomic orbital electron populations 1.70030 1.07122 1.27381 1.35079 1.25736 0.94618 1.00351 0.92600 0.86338 0.80229 0.81383 0.78709 1.19761 1.20400 1.18826 1.20883 0.94082 0.89091 1.53575 0.91157 1.18072 0.86627 0.81147 0.76416 1.90615 1.13923 1.85490 1.55782 1.48894 1.04793 1.05230 1.79795 1.21929 0.84128 0.95986 0.98460 1.22589 0.96417 0.96154 1.00999 1.23092 0.98669 0.95375 0.97124 1.23518 0.94966 0.87053 0.97659 1.89893 1.63803 1.55725 1.19690 1.23461 1.00947 0.89714 0.89102 1.20929 0.92782 0.83110 1.00851 0.92025 0.90964 0.93429 0.90592 0.90411 0.89367 0.90199 0.90137 0.89449 0.92473 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.14 11.85 55.55 0.66 -22.48 15 2 C 0.09 2.42 5.49 -17.37 -0.10 2.33 15 3 Si 0.91 20.04 29.56 -169.99 -5.03 15.01 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 7 C -0.54 -15.29 8.94 -35.63 -0.32 -15.61 15 8 H 0.07 1.82 6.76 -52.49 -0.35 1.47 15 9 C 0.57 16.64 7.78 -12.98 -0.10 16.54 15 10 O -0.58 -19.17 15.38 5.20 0.08 -19.09 15 11 N -0.65 -15.03 3.34 -172.50 -0.58 -15.61 15 12 C 0.12 2.15 6.50 -2.29 -0.01 2.13 15 13 C -0.12 -1.68 6.53 -25.26 -0.16 -1.84 15 14 C -0.14 -2.09 1.12 -155.63 -0.17 -2.27 15 15 C 0.04 0.60 8.07 26.03 0.21 0.81 15 16 O -0.37 -5.65 12.74 -35.23 -0.45 -6.10 15 17 C 0.04 0.58 8.16 26.03 0.21 0.79 15 18 C 0.15 2.94 6.43 -3.66 -0.02 2.92 15 19 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 20 H 0.07 1.32 7.25 -51.92 -0.38 0.94 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.08 0.81 7.99 -51.92 -0.41 0.39 15 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.09 1.22 8.08 -51.93 -0.42 0.80 15 25 H 0.08 0.86 8.04 -51.93 -0.42 0.44 15 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 27 H 0.09 1.09 8.10 -51.93 -0.42 0.67 15 28 H 0.06 1.19 8.09 -51.93 -0.42 0.77 15 29 H 0.05 1.16 7.93 -51.93 -0.41 0.75 15 LS Contribution 248.16 15.07 3.74 3.74 Total: -1.00 -34.71 248.16 -5.68 -40.39 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.64 Total: -1.68 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.47 Total: 5.80 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.08 Total: -38.08 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.37 Total: -25.19 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -34.71 -5.68 -40.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347867901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.010 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds