Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47124 * 274.98088 * 3 2 1 5 5 H 1.48496 * 109.47212 * 34.98152 * 3 2 1 6 6 H 1.48503 * 109.47067 * 154.98378 * 3 2 1 7 7 C 1.40051 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00444 * 186.04459 * 7 2 1 9 9 C 1.46382 * 119.99978 * 6.04936 * 7 2 1 10 10 O 1.21685 * 119.99515 * 353.61381 * 9 7 2 11 11 N 1.34775 * 120.00314 * 173.62131 * 9 7 2 12 12 C 1.47568 * 125.65776 * 359.97217 * 11 9 7 13 13 C 1.55204 * 105.04903 * 203.89655 * 12 11 9 14 14 C 1.53584 * 101.35957 * 324.64429 * 13 12 11 15 15 C 1.51717 * 116.90270 * 261.68914 * 14 13 12 16 16 O 1.43665 * 88.05266 * 218.01467 * 15 14 13 17 17 C 1.43665 * 88.75656 * 26.63918 * 16 15 14 18 18 C 1.47436 * 125.66036 * 179.97438 * 11 9 7 19 19 H 0.97002 * 119.99774 * 0.02562 * 1 2 3 20 20 H 1.09008 * 110.32344 * 322.78881 * 12 11 9 21 21 H 1.08998 * 110.32817 * 84.89959 * 12 11 9 22 22 H 1.09007 * 111.04545 * 206.62626 * 13 12 11 23 23 H 1.08999 * 111.05182 * 82.66847 * 13 12 11 24 24 H 1.09000 * 113.46048 * 103.21691 * 15 14 13 25 25 H 1.09005 * 113.45940 * 332.81113 * 15 14 13 26 26 H 1.08999 * 113.45423 * 88.15408 * 17 16 15 27 27 H 1.08991 * 113.45593 * 218.56465 * 17 16 15 28 28 H 1.08994 * 110.00335 * 58.41100 * 18 11 9 29 29 H 1.09005 * 109.99804 * 297.06250 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.0990 9 6 1.2812 -2.4771 -0.1325 10 8 0.0644 -2.4835 -0.1266 11 7 1.9606 -3.6339 -0.2613 12 6 3.4297 -3.7707 -0.2845 13 6 3.6989 -5.0994 -1.0402 14 6 2.5139 -5.9580 -0.5739 15 6 2.7759 -6.9317 0.5598 16 8 1.9107 -7.8648 -0.1071 17 6 2.2387 -7.2301 -1.3535 18 6 1.3593 -4.9727 -0.4025 19 1 -0.4850 0.8401 -0.0004 20 1 3.8796 -2.9336 -0.8184 21 1 3.8210 -3.8252 0.7314 22 1 4.6470 -5.5401 -0.7317 23 1 3.6721 -4.9483 -2.1193 24 1 2.3897 -6.5926 1.5210 25 1 3.8124 -7.2644 0.6153 26 1 3.1253 -7.6461 -1.8321 27 1 1.3915 -7.1470 -2.0342 28 1 0.7125 -5.0003 -1.2794 29 1 0.7869 -5.2205 0.4914 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347867901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -69.195458 kcal Electronic energy + Delta-G solvation = -14157.449531 eV Core-core repulsion = 11659.895787 eV Total energy + Delta-G solvation = -2497.553744 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.29731 -39.48250 -37.08952 -34.68671 -32.29797 -30.13812 -28.66683 -27.30573 -26.20538 -23.59627 -21.40009 -19.92117 -18.59076 -17.71654 -17.33590 -16.92853 -16.41651 -16.00565 -15.93670 -15.40337 -14.43896 -14.15281 -13.79596 -13.57822 -13.08795 -12.96042 -12.83059 -12.70243 -12.47937 -12.34819 -11.99803 -11.39905 -11.31618 -10.96275 -10.75916 -9.92344 -9.17043 -8.33973 -6.88834 1.38969 1.40439 1.57011 2.21427 2.40740 2.70329 3.00761 3.15140 3.45099 3.57737 3.81832 4.17675 4.37040 4.41266 4.55973 4.60086 4.74764 4.76236 4.84653 4.93362 5.01501 5.08188 5.13617 5.27625 5.30584 5.60233 5.99707 6.35277 6.82858 7.43042 8.40332 8.63026 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064389 B = 0.007904 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.750313 B = 3541.525494 C = 3816.475469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.563 4.563 8 H 0.091 0.909 9 C 0.548 3.452 10 O -0.637 6.637 11 N -0.655 5.655 12 C 0.108 3.892 13 C -0.103 4.103 14 C -0.142 4.142 15 C 0.051 3.949 16 O -0.399 6.399 17 C 0.054 3.946 18 C 0.143 3.857 19 H 0.275 0.725 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.124 0.876 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -9.134 -2.300 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.600 4.600 8 H 0.109 0.891 9 C 0.355 3.645 10 O -0.525 6.525 11 N -0.393 5.393 12 C -0.015 4.015 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.025 4.025 16 O -0.319 6.319 17 C -0.023 4.023 18 C 0.019 3.981 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.142 0.858 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.427 -9.218 -2.193 14.844 hybrid contribution -0.467 0.903 0.104 1.022 sum 10.961 -8.315 -2.088 13.915 Atomic orbital electron populations 1.70212 1.09770 1.29102 1.36274 1.27084 0.95522 1.05178 0.91082 0.84949 0.78965 0.74727 0.79297 1.18599 1.19769 1.16770 1.21394 0.95176 0.89558 1.53836 0.89071 1.18536 0.86300 0.83331 0.76311 1.90550 1.16439 1.87037 1.58460 1.48718 1.07518 1.04967 1.78077 1.22273 0.80504 0.98742 0.99996 1.22577 0.97702 0.92851 1.00898 1.22957 0.96674 0.95184 0.99452 1.23677 0.96776 0.85840 0.96232 1.89890 1.64836 1.56154 1.21004 1.23632 1.02532 0.87811 0.88327 1.21006 0.94904 0.83444 0.98763 0.91474 0.91348 0.92307 0.85799 0.89598 0.90772 0.85889 0.85890 0.89928 0.94507 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.54 11.85 21.84 0.26 -51.28 15 2 C 0.03 1.48 5.49 85.31 0.47 1.95 15 3 Si 1.00 40.94 29.56 68.60 2.03 42.96 15 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 15 6 H -0.24 -9.14 7.11 99.48 0.71 -8.43 15 7 C -0.56 -32.50 8.94 24.83 0.22 -32.27 15 8 H 0.09 4.68 6.76 -2.91 -0.02 4.66 15 9 C 0.55 33.40 7.78 86.36 0.67 34.07 15 10 O -0.64 -45.14 15.38 -4.30 -0.07 -45.20 15 11 N -0.65 -31.20 3.34 -817.90 -2.73 -33.94 15 12 C 0.11 3.69 6.50 86.93 0.56 4.25 15 13 C -0.10 -2.38 6.53 31.55 0.21 -2.18 15 14 C -0.14 -3.88 1.12 -52.91 -0.06 -3.94 15 15 C 0.05 1.21 8.07 64.78 0.52 1.74 15 16 O -0.40 -11.25 12.74 -148.98 -1.90 -13.15 15 17 C 0.05 1.21 8.16 64.78 0.53 1.74 15 18 C 0.14 5.90 6.43 86.12 0.55 6.45 15 19 H 0.28 15.51 8.29 -92.71 -0.77 14.74 15 20 H 0.07 2.38 7.25 -2.38 -0.02 2.37 15 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.12 1.81 7.99 -2.38 -0.02 1.79 15 23 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.07 1.96 8.08 -2.39 -0.02 1.94 15 25 H 0.12 1.94 8.04 -2.38 -0.02 1.92 15 26 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.08 1.94 8.10 -2.39 -0.02 1.92 15 28 H 0.04 1.63 8.09 -2.39 -0.02 1.61 15 29 H 0.03 1.32 7.93 -2.38 -0.02 1.30 15 Total: -1.00 -81.35 248.16 2.41 -78.95 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.14 Total: 9.84 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 3.68 Total: 11.82 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.48 Total: -85.22 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.96 Total: -58.35 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -81.35 2.41 -78.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347867901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.750 kcal (2) G-P(sol) polarization free energy of solvation -81.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds