Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00215 * 2 1 4 4 H 1.09003 * 110.41793 * 357.69458 * 3 2 1 5 5 O 1.44415 * 110.37723 * 235.38111 * 3 2 1 6 6 C 1.44642 * 105.37338 * 200.73796 * 5 3 2 7 7 C 1.54477 * 104.69773 * 40.34325 * 6 5 3 8 8 C 1.54478 * 110.37139 * 119.99880 * 3 2 1 9 9 H 1.09000 * 110.51268 * 24.16636 * 8 3 2 10 10 C 1.50697 * 110.51435 * 261.45749 * 8 3 2 11 11 O 1.21296 * 119.99784 * 3.90286 * 10 8 3 12 12 N 1.34780 * 120.00477 * 183.90287 * 10 8 3 13 13 C 1.37094 * 120.00349 * 180.02562 * 12 10 8 14 14 H 1.08004 * 119.99875 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00128 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99640 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47148 * 60.00018 * 17 15 13 19 19 H 1.48501 * 109.47492 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47407 * 300.00243 * 17 15 13 21 21 H 1.07999 * 119.99570 * 0.02562 * 1 2 3 22 22 H 1.07994 * 119.99971 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99858 * 180.02562 * 2 1 3 24 24 H 1.09006 * 110.33613 * 281.58701 * 6 5 3 25 25 H 1.09000 * 110.51087 * 159.18466 * 6 5 3 26 26 H 1.09002 * 110.51371 * 217.47805 * 7 6 5 27 27 H 1.08994 * 110.51108 * 94.90453 * 7 6 5 28 28 H 0.97007 * 119.99444 * 0.02562 * 12 10 8 29 29 H 0.97000 * 119.99560 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3698 2.1448 -0.0411 5 8 2.9810 1.3560 -1.1141 6 6 3.9646 2.3541 -0.7556 7 6 4.2364 2.1149 0.7461 8 6 2.9595 1.4087 1.2542 9 1 3.1982 0.4161 1.6361 10 6 2.2857 2.2370 2.3176 11 8 1.1597 2.6519 2.1404 12 7 2.9340 2.5169 3.4655 13 6 2.3208 3.2700 4.4331 14 1 1.3182 3.6394 4.2753 15 6 2.9895 3.5590 5.6164 16 7 4.2095 3.1099 5.8081 17 14 2.1542 4.5857 6.9345 18 1 0.9132 3.9033 7.3812 19 1 3.0720 4.7492 8.0904 20 1 1.8129 5.9204 6.3801 21 1 -0.5399 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 3.5633 3.3552 -0.9139 25 1 4.8782 2.2149 -1.3335 26 1 4.3803 3.0631 1.2641 27 1 5.1067 1.4723 0.8790 28 1 3.8347 2.1854 3.6071 29 1 4.6764 3.3120 6.6340 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = -69.076185 kcal Electronic energy + Delta-G solvation = -14016.243705 eV Core-core repulsion = 11518.695133 eV Total energy + Delta-G solvation = -2497.548572 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67969 -37.45715 -34.09017 -33.44490 -32.01071 -30.91551 -28.11664 -25.19147 -22.79817 -21.79211 -19.77701 -19.00880 -17.98312 -16.30698 -15.93050 -15.18941 -15.14897 -14.35288 -13.80439 -13.54317 -13.34453 -12.90847 -12.65183 -12.01865 -11.56050 -11.35732 -11.08037 -10.95584 -10.73971 -10.48755 -10.46588 -10.24483 -9.57327 -9.52134 -9.14418 -8.40124 -8.02264 -6.46234 -3.87491 2.47728 3.16878 3.23333 3.27616 3.81957 4.11196 4.30558 4.81620 4.94746 5.12184 5.25803 5.31437 5.39750 5.52579 5.65706 5.86118 5.93910 6.08834 6.14664 6.20655 6.34919 6.44378 6.83931 6.97900 7.18237 7.50691 8.00228 8.54678 9.11859 9.48645 9.99107 10.71122 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.044063 B = 0.008291 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.307868 B = 3376.524274 C = 3760.714953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.146 4.146 3 C 0.119 3.881 4 H 0.092 0.908 5 O -0.376 6.376 6 C 0.048 3.952 7 C -0.147 4.147 8 C -0.127 4.127 9 H 0.095 0.905 10 C 0.448 3.552 11 O -0.592 6.592 12 N -0.556 5.556 13 C -0.304 4.304 14 H 0.103 0.897 15 C 0.024 3.976 16 N -0.900 5.900 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.393 0.607 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -3.562 -8.091 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.061 3.939 4 H 0.110 0.890 5 O -0.295 6.295 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.149 4.149 9 H 0.113 0.887 10 C 0.234 3.766 11 O -0.478 6.478 12 N -0.191 5.191 13 C -0.433 4.433 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.541 5.541 17 Si 0.758 3.242 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.227 0.773 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.209 -3.378 -8.212 8.883 hybrid contribution 0.334 0.351 1.144 1.242 sum 0.543 -3.027 -7.068 7.708 Atomic orbital electron populations 1.23858 0.95821 1.02009 0.98846 1.22630 0.95723 0.97050 1.01046 1.21962 0.91150 0.96900 0.83843 0.89014 1.89105 1.40502 1.59550 1.40387 1.23397 0.92344 0.92434 0.94750 1.22981 0.97353 1.02035 0.96196 1.22495 0.95546 1.00542 0.96277 0.88709 1.19540 0.87391 0.85724 0.83947 1.90501 1.19650 1.57610 1.80064 1.41859 1.16668 1.46426 1.14187 1.19690 1.01073 1.27680 0.94871 0.87909 1.25277 0.95754 0.98139 0.98604 1.69607 1.11459 1.45594 1.27391 0.85906 0.78753 0.80019 0.79488 1.19848 1.20921 1.19848 0.87990 0.88337 0.87256 0.92259 0.89221 0.89713 0.90336 0.77316 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.33 29.01 0.42 -2.13 15 2 C -0.15 -2.37 9.10 -36.03 -0.33 -2.70 15 3 C 0.12 2.15 2.97 -27.11 -0.08 2.07 15 4 H 0.09 1.85 6.66 -51.93 -0.35 1.50 15 5 O -0.38 -6.41 11.33 -35.23 -0.40 -6.81 15 6 C 0.05 0.70 7.65 37.93 0.29 0.99 15 7 C -0.15 -2.34 6.66 -25.16 -0.17 -2.51 15 8 C -0.13 -2.36 3.04 -90.21 -0.27 -2.64 15 9 H 0.09 1.65 7.86 -51.93 -0.41 1.24 15 10 C 0.45 10.66 6.93 -10.99 -0.08 10.58 15 11 O -0.59 -15.97 15.06 5.54 0.08 -15.88 15 12 N -0.56 -14.09 5.17 -10.96 -0.06 -14.15 15 13 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 15 14 H 0.10 2.98 7.16 -52.48 -0.38 2.60 15 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 16 N -0.90 -24.27 13.05 55.50 0.72 -23.54 15 17 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 15 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 21 H 0.10 1.62 7.86 -52.49 -0.41 1.20 15 22 H 0.10 1.22 8.06 -52.49 -0.42 0.79 15 23 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.08 1.45 7.68 -51.93 -0.40 1.05 15 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 28 H 0.39 9.56 7.88 -40.82 -0.32 9.24 15 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 255.31 15.07 3.85 3.85 Total: -1.00 -30.27 255.31 -4.80 -35.07 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.51 Total: 9.98 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.46 Total: -4.36 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.67 Total: -37.69 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.32 Total: -22.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.27 -4.80 -35.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.005 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds