Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00215 * 2 1 4 4 H 1.09003 * 110.41793 * 357.69458 * 3 2 1 5 5 O 1.44415 * 110.37723 * 235.38111 * 3 2 1 6 6 C 1.44642 * 105.37338 * 200.73796 * 5 3 2 7 7 C 1.54477 * 104.69773 * 40.34325 * 6 5 3 8 8 C 1.54478 * 110.37139 * 119.99880 * 3 2 1 9 9 H 1.09000 * 110.51268 * 24.16636 * 8 3 2 10 10 C 1.50697 * 110.51435 * 261.45749 * 8 3 2 11 11 O 1.21296 * 119.99784 * 3.90286 * 10 8 3 12 12 N 1.34780 * 120.00477 * 183.90287 * 10 8 3 13 13 C 1.37094 * 120.00349 * 180.02562 * 12 10 8 14 14 H 1.08004 * 119.99875 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00128 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99640 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47148 * 60.00018 * 17 15 13 19 19 H 1.48501 * 109.47492 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47407 * 300.00243 * 17 15 13 21 21 H 1.07999 * 119.99570 * 0.02562 * 1 2 3 22 22 H 1.07994 * 119.99971 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99858 * 180.02562 * 2 1 3 24 24 H 1.09006 * 110.33613 * 281.58701 * 6 5 3 25 25 H 1.09000 * 110.51087 * 159.18466 * 6 5 3 26 26 H 1.09002 * 110.51371 * 217.47805 * 7 6 5 27 27 H 1.08994 * 110.51108 * 94.90453 * 7 6 5 28 28 H 0.97007 * 119.99444 * 0.02562 * 12 10 8 29 29 H 0.97000 * 119.99560 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3698 2.1448 -0.0411 5 8 2.9810 1.3560 -1.1141 6 6 3.9646 2.3541 -0.7556 7 6 4.2364 2.1149 0.7461 8 6 2.9595 1.4087 1.2542 9 1 3.1982 0.4161 1.6361 10 6 2.2857 2.2370 2.3176 11 8 1.1597 2.6519 2.1404 12 7 2.9340 2.5169 3.4655 13 6 2.3208 3.2700 4.4331 14 1 1.3182 3.6394 4.2753 15 6 2.9895 3.5590 5.6164 16 7 4.2095 3.1099 5.8081 17 14 2.1542 4.5857 6.9345 18 1 0.9132 3.9033 7.3812 19 1 3.0720 4.7492 8.0904 20 1 1.8129 5.9204 6.3801 21 1 -0.5399 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 3.5633 3.3552 -0.9139 25 1 4.8782 2.2149 -1.3335 26 1 4.3803 3.0631 1.2641 27 1 5.1067 1.4723 0.8790 28 1 3.8347 2.1854 3.6071 29 1 4.6764 3.3120 6.6340 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = -90.275015 kcal Electronic energy + Delta-G solvation = -14017.162955 eV Core-core repulsion = 11518.695133 eV Total energy + Delta-G solvation = -2498.467822 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22246 -39.20329 -36.06621 -34.74828 -33.70477 -32.69553 -29.44869 -27.15082 -24.28609 -23.19111 -21.11344 -20.74946 -19.97657 -17.98842 -17.25930 -16.95440 -16.52754 -16.13810 -15.58863 -15.26693 -14.61185 -14.41629 -14.20784 -13.64643 -13.31934 -13.01814 -12.67958 -12.46718 -12.28347 -12.14835 -11.96468 -11.82233 -11.54317 -10.87456 -10.46142 -10.27104 -10.06323 -8.50061 -5.99680 1.24785 1.37769 1.40934 1.51774 1.96689 2.27167 2.88671 3.14916 3.25290 3.67446 3.69334 3.98458 4.09637 4.27461 4.35307 4.45490 4.53121 4.80079 4.81869 4.92274 5.01997 5.05231 5.37736 5.59737 5.72490 5.89966 5.95690 6.53199 7.06707 7.49209 8.03344 8.66836 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.044063 B = 0.008291 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.307868 B = 3376.524274 C = 3760.714953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.164 4.164 3 C 0.121 3.879 4 H 0.061 0.939 5 O -0.379 6.379 6 C 0.046 3.954 7 C -0.143 4.143 8 C -0.122 4.122 9 H 0.113 0.887 10 C 0.447 3.553 11 O -0.630 6.630 12 N -0.563 5.563 13 C -0.340 4.340 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.271 1.271 21 H 0.085 0.915 22 H 0.130 0.870 23 H 0.133 0.867 24 H 0.055 0.945 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.397 0.603 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -4.272 -8.200 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.063 3.937 4 H 0.079 0.921 5 O -0.298 6.298 6 C -0.031 4.031 7 C -0.181 4.181 8 C -0.144 4.144 9 H 0.131 0.869 10 C 0.234 3.766 11 O -0.518 6.518 12 N -0.199 5.199 13 C -0.469 4.469 14 H 0.098 0.902 15 C -0.209 4.209 16 N -0.557 5.557 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.196 1.196 21 H 0.103 0.897 22 H 0.148 0.852 23 H 0.151 0.849 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.231 0.769 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.066 -4.097 -8.334 9.347 hybrid contribution 0.064 0.582 1.130 1.273 sum 1.131 -3.515 -7.203 8.095 Atomic orbital electron populations 1.24071 0.95762 1.02772 0.97501 1.22793 0.96162 0.96965 1.02265 1.21811 0.90930 0.97058 0.83894 0.92113 1.89106 1.40670 1.60083 1.39968 1.23606 0.93238 0.91880 0.94346 1.23000 0.96912 1.01526 0.96679 1.22484 0.96618 1.00496 0.94821 0.86904 1.20430 0.86924 0.85000 0.84218 1.90473 1.21495 1.59000 1.80818 1.41893 1.16847 1.46652 1.14471 1.19676 1.00883 1.29768 0.96609 0.90222 1.26051 0.96284 0.98655 0.99933 1.69664 1.12141 1.45802 1.28110 0.84981 0.77969 0.78302 0.77051 1.19689 1.19357 1.19643 0.89662 0.85182 0.84899 0.92661 0.85467 0.91323 0.87367 0.76870 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 14.33 67.78 0.97 -3.82 15 2 C -0.16 -5.09 9.10 25.65 0.23 -4.86 15 3 C 0.12 4.31 2.97 30.35 0.09 4.40 15 4 H 0.06 2.53 6.66 -2.39 -0.02 2.52 15 5 O -0.38 -12.25 11.33 -148.98 -1.69 -13.94 15 6 C 0.05 1.24 7.65 72.48 0.55 1.79 15 7 C -0.14 -4.31 6.66 31.61 0.21 -4.09 15 8 C -0.12 -4.47 3.04 -10.53 -0.03 -4.51 15 9 H 0.11 3.73 7.86 -2.39 -0.02 3.71 15 10 C 0.45 21.61 6.93 87.66 0.61 22.22 15 11 O -0.63 -35.13 15.06 -3.08 -0.05 -35.17 15 12 N -0.56 -29.00 5.17 -306.98 -1.59 -30.59 15 13 C -0.34 -19.27 9.68 84.04 0.81 -18.46 15 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 15 15 C -0.01 -0.47 5.50 84.93 0.47 0.00 15 16 N -0.92 -48.94 13.05 21.66 0.28 -48.66 15 17 Si 0.99 42.46 29.55 68.60 2.03 44.49 15 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 19 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 21 H 0.08 2.75 7.86 -2.91 -0.02 2.72 15 22 H 0.13 2.91 8.06 -2.91 -0.02 2.88 15 23 H 0.13 3.47 8.06 -2.91 -0.02 3.45 15 24 H 0.06 1.54 8.14 -2.38 -0.02 1.52 15 25 H 0.13 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.07 2.30 7.68 -2.39 -0.02 2.28 15 27 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 28 H 0.40 19.44 7.88 -92.70 -0.73 18.71 15 29 H 0.28 13.95 8.31 -92.71 -0.77 13.17 15 Total: -1.00 -65.29 255.31 3.32 -61.97 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.42 Total: 29.23 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.92 Total: -7.33 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.31 Total: -79.25 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.73 Total: -49.11 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -65.29 3.32 -61.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.304 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds