Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00379 * 2 1 4 4 H 1.08992 * 109.98849 * 358.91732 * 3 2 1 5 5 O 1.44040 * 109.98907 * 237.71578 * 3 2 1 6 6 C 1.44390 * 107.03658 * 214.19547 * 5 3 2 7 7 C 1.54995 * 103.49057 * 40.00990 * 6 5 3 8 8 C 1.54096 * 109.87718 * 120.00299 * 3 2 1 9 9 H 1.09001 * 110.49517 * 2.64349 * 8 3 2 10 10 N 1.46503 * 110.48375 * 240.13112 * 8 3 2 11 11 C 1.34786 * 119.99926 * 156.84799 * 10 8 3 12 12 O 1.21686 * 119.99696 * 359.97438 * 11 10 8 13 13 C 1.46373 * 119.99966 * 179.97438 * 11 10 8 14 14 H 1.08002 * 119.99728 * 6.24178 * 13 11 10 15 15 C 1.40042 * 119.99893 * 186.24264 * 13 11 10 16 16 N 1.30671 * 119.99961 * 184.67122 * 15 13 11 17 17 Si 1.86802 * 120.00099 * 4.67753 * 15 13 11 18 18 H 1.48505 * 109.47216 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46975 * 299.99476 * 17 15 13 20 20 H 1.48499 * 109.47526 * 59.99639 * 17 15 13 21 21 H 1.08000 * 119.99621 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.00449 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99707 * 180.02562 * 2 1 3 24 24 H 1.09001 * 110.61468 * 281.50941 * 6 5 3 25 25 H 1.08993 * 110.61383 * 158.51715 * 6 5 3 26 26 H 1.08999 * 110.90719 * 204.77410 * 7 6 5 27 27 H 1.09008 * 110.93272 * 81.18626 * 7 6 5 28 28 H 0.96996 * 120.00087 * 336.84310 * 10 8 3 29 29 H 0.96993 * 120.00036 * 354.90301 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3630 2.1398 -0.0194 5 8 2.9359 1.3700 -1.1444 6 6 4.1162 2.0945 -0.7361 7 6 4.3867 1.5674 0.6962 8 6 2.9531 1.3964 1.2550 9 1 2.8792 0.4813 1.8425 10 7 2.5773 2.5569 2.0664 11 6 2.8687 2.5821 3.3821 12 8 3.4435 1.6407 3.8961 13 6 2.4937 3.7418 4.1927 14 1 1.8962 4.5315 3.7615 15 6 2.9098 3.8274 5.5271 16 7 2.5001 4.8159 6.2771 17 14 4.0507 2.5286 6.2349 18 1 4.3402 2.8456 7.6565 19 1 3.3995 1.1968 6.1469 20 1 5.3197 2.5110 5.4638 21 1 -0.5399 0.9353 0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 3.9218 3.1669 -0.7200 25 1 4.9541 1.8651 -1.3942 26 1 4.9473 2.2974 1.2799 27 1 4.9093 0.6112 0.6670 28 1 2.1189 3.3072 1.6567 29 1 1.9687 5.5296 5.8911 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569207517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -81.564999 kcal Electronic energy + Delta-G solvation = -14044.093034 eV Core-core repulsion = 11546.002907 eV Total energy + Delta-G solvation = -2498.090127 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.69528 -37.47695 -33.96875 -33.40448 -32.84206 -30.27393 -27.89586 -25.88729 -22.69830 -21.50248 -20.10096 -19.44102 -18.02948 -16.44854 -16.19039 -15.46870 -14.86204 -14.36677 -14.01475 -13.56266 -13.20072 -12.90515 -12.85664 -12.12684 -12.05026 -11.57545 -11.17364 -10.97455 -10.76032 -10.40833 -10.23219 -9.71662 -9.42818 -9.24658 -9.00364 -8.04910 -7.94709 -7.02868 -4.97485 2.21934 3.55085 3.66493 3.98700 4.10035 4.28283 4.42856 4.59977 4.82109 4.93225 5.06490 5.23025 5.33460 5.41784 5.49407 5.64875 5.80729 5.88347 6.08378 6.27626 6.37101 6.59334 6.72509 6.92827 7.42021 7.62686 7.71119 8.05585 8.79688 8.99005 10.00203 10.29833 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041301 B = 0.008833 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.779090 B = 3169.081128 C = 3338.636363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C 0.097 3.903 4 H 0.074 0.926 5 O -0.374 6.374 6 C 0.046 3.954 7 C -0.165 4.165 8 C 0.129 3.871 9 H 0.097 0.903 10 N -0.747 5.747 11 C 0.552 3.448 12 O -0.616 6.616 13 C -0.598 4.598 14 H 0.070 0.930 15 C 0.061 3.939 16 N -0.832 5.832 17 Si 1.131 2.869 18 H -0.322 1.322 19 H -0.281 1.281 20 H -0.291 1.291 21 H 0.097 0.903 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.387 0.613 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -5.007 -12.013 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.039 3.961 4 H 0.092 0.908 5 O -0.293 6.293 6 C -0.030 4.030 7 C -0.204 4.204 8 C 0.022 3.978 9 H 0.115 0.885 10 N -0.399 5.399 11 C 0.361 3.639 12 O -0.509 6.509 13 C -0.634 4.634 14 H 0.088 0.912 15 C -0.157 4.157 16 N -0.460 5.460 17 Si 0.963 3.037 18 H -0.254 1.254 19 H -0.208 1.208 20 H -0.219 1.219 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.133 0.867 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.219 0.781 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.652 -6.146 -10.531 12.211 hybrid contribution -1.107 1.181 -1.607 2.281 sum -0.455 -4.965 -12.138 13.122 Atomic orbital electron populations 1.23835 0.95678 1.02089 0.99824 1.22791 0.95764 0.97604 1.00199 1.22178 0.92236 0.95916 0.85773 0.90776 1.88925 1.30437 1.76619 1.33306 1.23575 0.87886 0.95987 0.95590 1.23572 0.98378 1.02508 0.95978 1.21903 0.91753 0.92813 0.91309 0.88522 1.45855 1.65012 1.19370 1.09627 1.18461 0.77920 0.87683 0.79809 1.90149 1.50540 1.39951 1.70273 1.22045 1.36760 1.06020 0.98596 0.91198 1.27167 0.95549 0.99986 0.93001 1.70651 1.28233 1.08981 1.38085 0.82371 0.75385 0.74259 0.71640 1.25400 1.20783 1.21881 0.88426 0.87962 0.86723 0.92222 0.89176 0.89467 0.90422 0.78058 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.02 0.42 -1.79 15 2 C -0.15 -2.04 8.95 -36.02 -0.32 -2.36 15 3 C 0.10 1.50 3.59 -27.31 -0.10 1.40 15 4 H 0.07 1.11 7.29 -51.93 -0.38 0.73 15 5 O -0.37 -5.77 11.18 -35.23 -0.39 -6.16 15 6 C 0.05 0.63 7.72 38.21 0.30 0.93 15 7 C -0.17 -2.66 6.88 -24.72 -0.17 -2.83 15 8 C 0.13 2.34 2.99 -66.40 -0.20 2.14 15 9 H 0.10 1.93 7.16 -51.93 -0.37 1.56 15 10 N -0.75 -15.57 5.09 -53.73 -0.27 -15.85 15 11 C 0.55 14.48 7.57 -12.98 -0.10 14.38 15 12 O -0.62 -17.50 11.75 5.20 0.06 -17.44 15 13 C -0.60 -16.75 9.96 -35.64 -0.36 -17.11 15 14 H 0.07 1.93 8.05 -52.49 -0.42 1.50 15 15 C 0.06 1.74 5.52 -17.37 -0.10 1.65 15 16 N -0.83 -23.98 13.64 55.55 0.76 -23.22 15 17 Si 1.13 29.84 25.99 -169.99 -4.42 25.42 15 18 H -0.32 -8.19 7.11 56.52 0.40 -7.79 15 19 H -0.28 -7.64 6.78 56.52 0.38 -7.26 15 20 H -0.29 -7.68 7.11 56.52 0.40 -7.28 15 21 H 0.10 1.16 7.85 -52.49 -0.41 0.75 15 22 H 0.10 1.06 8.06 -52.49 -0.42 0.64 15 23 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.09 1.55 8.06 -51.93 -0.42 1.13 15 27 H 0.08 1.16 8.14 -51.92 -0.42 0.74 15 28 H 0.39 7.24 8.29 -40.82 -0.34 6.91 15 29 H 0.28 7.67 8.72 -40.82 -0.36 7.31 15 LS Contribution 252.11 15.07 3.80 3.80 Total: -1.00 -31.32 252.11 -4.72 -36.04 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.63 Total: 1.00 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.63 Total: -3.60 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.48 Total: -39.07 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.33 Total: -23.60 kcal Atomic # 14 Polarization: 29.84 SS G_CDS: -4.42 Total: 25.42 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.32 -4.72 -36.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569207517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.528 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds