Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00379 * 2 1 4 4 H 1.08992 * 109.98849 * 358.91732 * 3 2 1 5 5 O 1.44040 * 109.98907 * 237.71578 * 3 2 1 6 6 C 1.44390 * 107.03658 * 214.19547 * 5 3 2 7 7 C 1.54995 * 103.49057 * 40.00990 * 6 5 3 8 8 C 1.54096 * 109.87718 * 120.00299 * 3 2 1 9 9 H 1.09001 * 110.49517 * 2.64349 * 8 3 2 10 10 N 1.46503 * 110.48375 * 240.13112 * 8 3 2 11 11 C 1.34786 * 119.99926 * 156.84799 * 10 8 3 12 12 O 1.21686 * 119.99696 * 359.97438 * 11 10 8 13 13 C 1.46373 * 119.99966 * 179.97438 * 11 10 8 14 14 H 1.08002 * 119.99728 * 6.24178 * 13 11 10 15 15 C 1.40042 * 119.99893 * 186.24264 * 13 11 10 16 16 N 1.30671 * 119.99961 * 184.67122 * 15 13 11 17 17 Si 1.86802 * 120.00099 * 4.67753 * 15 13 11 18 18 H 1.48505 * 109.47216 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46975 * 299.99476 * 17 15 13 20 20 H 1.48499 * 109.47526 * 59.99639 * 17 15 13 21 21 H 1.08000 * 119.99621 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.00449 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99707 * 180.02562 * 2 1 3 24 24 H 1.09001 * 110.61468 * 281.50941 * 6 5 3 25 25 H 1.08993 * 110.61383 * 158.51715 * 6 5 3 26 26 H 1.08999 * 110.90719 * 204.77410 * 7 6 5 27 27 H 1.09008 * 110.93272 * 81.18626 * 7 6 5 28 28 H 0.96996 * 120.00087 * 336.84310 * 10 8 3 29 29 H 0.96993 * 120.00036 * 354.90301 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3630 2.1398 -0.0194 5 8 2.9359 1.3700 -1.1444 6 6 4.1162 2.0945 -0.7361 7 6 4.3867 1.5674 0.6962 8 6 2.9531 1.3964 1.2550 9 1 2.8792 0.4813 1.8425 10 7 2.5773 2.5569 2.0664 11 6 2.8687 2.5821 3.3821 12 8 3.4435 1.6407 3.8961 13 6 2.4937 3.7418 4.1927 14 1 1.8962 4.5315 3.7615 15 6 2.9098 3.8274 5.5271 16 7 2.5001 4.8159 6.2771 17 14 4.0507 2.5286 6.2349 18 1 4.3402 2.8456 7.6565 19 1 3.3995 1.1968 6.1469 20 1 5.3197 2.5110 5.4638 21 1 -0.5399 0.9353 0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 3.9218 3.1669 -0.7200 25 1 4.9541 1.8651 -1.3942 26 1 4.9473 2.2974 1.2799 27 1 4.9093 0.6112 0.6670 28 1 2.1189 3.3072 1.6567 29 1 1.9687 5.5296 5.8911 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569207517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -104.703107 kcal Electronic energy + Delta-G solvation = -14045.096378 eV Core-core repulsion = 11546.002907 eV Total energy + Delta-G solvation = -2499.093471 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.08245 -39.35986 -35.44096 -35.04026 -34.68606 -31.74521 -29.29757 -27.80893 -23.89522 -23.08510 -21.48442 -21.02891 -20.04990 -17.92367 -17.46171 -17.22485 -16.20995 -16.07939 -15.63830 -15.27487 -14.86298 -14.69581 -14.18999 -14.06155 -13.40079 -13.09435 -12.58866 -12.40860 -12.27919 -12.09731 -12.02326 -11.37795 -11.20866 -10.85408 -10.55303 -10.12206 -9.76206 -9.22577 -7.17200 1.18694 1.41913 1.54162 1.95927 2.18216 2.37755 2.67928 3.08891 3.23125 3.63900 3.65514 3.88666 4.02765 4.21830 4.27796 4.43729 4.71531 4.80397 4.91997 4.96624 5.00933 5.41053 5.49711 5.57819 5.66092 5.73629 5.85876 6.01177 6.61679 7.08140 7.95218 8.09602 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041301 B = 0.008833 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.779090 B = 3169.081128 C = 3338.636363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.173 4.173 3 C 0.107 3.893 4 H 0.079 0.921 5 O -0.379 6.379 6 C 0.052 3.948 7 C -0.165 4.165 8 C 0.122 3.878 9 H 0.076 0.924 10 N -0.733 5.733 11 C 0.553 3.447 12 O -0.639 6.639 13 C -0.616 4.616 14 H 0.067 0.933 15 C 0.030 3.970 16 N -0.848 5.848 17 Si 1.162 2.838 18 H -0.308 1.308 19 H -0.296 1.296 20 H -0.294 1.294 21 H 0.102 0.898 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.398 0.602 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -5.522 -13.421 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C 0.049 3.951 4 H 0.097 0.903 5 O -0.298 6.298 6 C -0.024 4.024 7 C -0.204 4.204 8 C 0.016 3.984 9 H 0.094 0.906 10 N -0.384 5.384 11 C 0.360 3.640 12 O -0.534 6.534 13 C -0.653 4.653 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.476 5.476 17 Si 0.993 3.007 18 H -0.238 1.238 19 H -0.224 1.224 20 H -0.221 1.221 21 H 0.120 0.880 22 H 0.142 0.858 23 H 0.138 0.862 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.233 0.767 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.533 -6.640 -11.975 13.703 hybrid contribution -1.125 1.322 -1.256 2.143 sum -0.593 -5.318 -13.231 14.272 Atomic orbital electron populations 1.24111 0.95232 1.03436 0.97129 1.22850 0.96460 0.97184 1.02631 1.22061 0.91780 0.97062 0.84244 0.90292 1.88931 1.30858 1.76902 1.33123 1.23675 0.88264 0.96131 0.94364 1.23533 0.96797 1.02791 0.97265 1.22090 0.94021 0.90496 0.91835 0.90606 1.45575 1.63888 1.20615 1.08283 1.18304 0.77556 0.86757 0.81430 1.90130 1.51348 1.40551 1.71348 1.22227 1.37162 1.06778 0.99089 0.91481 1.27797 0.96179 1.00714 0.93777 1.70657 1.29129 1.09456 1.38341 0.81944 0.74313 0.72375 0.72054 1.23830 1.22401 1.22122 0.87974 0.85752 0.86165 0.91566 0.86314 0.91267 0.89360 0.76715 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 14.32 67.79 0.97 -2.64 15 2 C -0.17 -4.51 8.95 25.65 0.23 -4.28 15 3 C 0.11 3.08 3.59 30.22 0.11 3.19 15 4 H 0.08 2.20 7.29 -2.39 -0.02 2.18 15 5 O -0.38 -10.71 11.18 -148.98 -1.67 -12.38 15 6 C 0.05 1.28 7.72 72.66 0.56 1.84 15 7 C -0.16 -5.07 6.88 31.89 0.22 -4.85 15 8 C 0.12 4.26 2.99 45.98 0.14 4.40 15 9 H 0.08 3.00 7.16 -2.39 -0.02 2.99 15 10 N -0.73 -29.88 5.09 -442.12 -2.25 -32.13 15 11 C 0.55 28.78 7.57 86.36 0.65 29.44 15 12 O -0.64 -36.19 11.75 -4.30 -0.05 -36.24 15 13 C -0.62 -34.44 9.96 24.83 0.25 -34.19 15 14 H 0.07 3.70 8.05 -2.91 -0.02 3.67 15 15 C 0.03 1.71 5.52 85.30 0.47 2.18 15 16 N -0.85 -48.68 13.64 21.83 0.30 -48.38 15 17 Si 1.16 60.45 25.99 68.60 1.78 62.24 15 18 H -0.31 -15.08 7.11 99.48 0.71 -14.38 15 19 H -0.30 -16.03 6.78 99.48 0.67 -15.36 15 20 H -0.29 -15.23 7.11 99.48 0.71 -14.52 15 21 H 0.10 2.16 7.85 -2.91 -0.02 2.14 15 22 H 0.12 2.19 8.06 -2.91 -0.02 2.17 15 23 H 0.12 2.95 8.06 -2.91 -0.02 2.93 15 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.07 2.39 8.06 -2.39 -0.02 2.37 15 27 H 0.09 2.51 8.14 -2.38 -0.02 2.49 15 28 H 0.40 14.41 8.29 -92.71 -0.77 13.65 15 29 H 0.28 15.39 8.72 -92.71 -0.81 14.58 15 Total: -1.00 -65.10 252.11 2.02 -63.08 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.31 Total: 8.73 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 3.60 Total: -4.91 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.95 Total: -80.51 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.72 Total: -48.62 kcal Atomic # 14 Polarization: 60.45 SS G_CDS: 1.78 Total: 62.24 kcal Total: -65.10 2.02 -63.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569207517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.625 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds