Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31349 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48506 * 109.47151 * 240.00244 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47271 * 120.00011 * 3 2 1 7 7 C 1.39078 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36816 * 120.00277 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00303 * 179.97438 * 9 7 2 11 11 O 1.21664 * 119.99907 * 0.02562 * 10 9 7 12 12 C 1.46950 * 120.00178 * 180.02562 * 10 9 7 13 13 C 1.33119 * 120.00110 * 173.28942 * 12 10 9 14 14 C 1.50699 * 119.99862 * 348.17481 * 13 12 10 15 15 H 1.09001 * 110.80572 * 348.07539 * 14 13 12 16 16 C 1.54818 * 110.90955 * 111.70150 * 14 13 12 17 17 C 1.54097 * 104.18776 * 139.11259 * 16 14 13 18 18 O 1.43741 * 107.29488 * 2.03479 * 17 16 14 19 19 C 1.44383 * 106.97676 * 333.48287 * 18 17 16 20 20 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99649 * 359.97438 * 9 7 2 22 22 H 1.08000 * 119.99755 * 353.27881 * 12 10 9 23 23 H 1.07999 * 120.00616 * 168.18152 * 13 12 10 24 24 H 1.09000 * 110.48526 * 20.43643 * 16 14 13 25 25 H 1.09002 * 110.48748 * 257.78969 * 16 14 13 26 26 H 1.09001 * 109.87527 * 121.45325 * 17 16 14 27 27 H 1.09000 * 109.88214 * 242.60850 * 17 16 14 28 28 H 1.09002 * 110.61655 * 281.55919 * 19 18 17 29 29 H 1.08998 * 110.61729 * 158.56490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6963 -1.2126 5 1 1.2826 2.7464 -0.0006 6 1 3.1013 1.6963 1.2125 7 6 2.0088 -1.2045 0.0005 8 1 3.0888 -1.2045 0.0001 9 7 1.3247 -2.3893 0.0005 10 6 1.9985 -3.5566 0.0005 11 8 3.2152 -3.5566 0.0010 12 6 1.2637 -4.8292 0.0000 13 6 1.9225 -5.9781 -0.1347 14 6 3.3709 -5.9718 -0.5507 15 1 3.6686 -4.9839 -0.9021 16 6 4.2811 -6.4427 0.6098 17 6 5.3269 -7.3454 -0.0729 18 8 5.0494 -7.3299 -1.4831 19 6 3.6412 -7.0483 -1.6326 20 1 -0.4850 0.8401 -0.0004 21 1 0.3547 -2.3893 0.0005 22 1 0.1892 -4.8323 0.1090 23 1 1.4189 -6.9147 0.0539 24 1 3.7049 -7.0111 1.3399 25 1 4.7654 -5.5897 1.0850 26 1 6.3285 -6.9574 0.1120 27 1 5.2448 -8.3627 0.3098 28 1 3.0484 -7.9427 -1.4408 29 1 3.4321 -6.6540 -2.6271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113966.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -64.985616 kcal Electronic energy + Delta-G solvation = -13710.549851 eV Core-core repulsion = 11213.178659 eV Total energy + Delta-G solvation = -2497.371191 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27810 -38.07887 -34.51189 -33.24205 -31.40140 -30.34758 -28.53116 -25.31970 -22.60001 -21.93315 -20.42824 -18.74394 -17.66487 -16.39092 -16.03359 -15.18904 -14.87981 -14.31998 -14.03456 -13.52255 -13.28881 -12.84520 -12.50228 -12.11018 -11.60071 -11.39084 -11.20541 -11.10887 -10.67480 -10.52535 -10.32084 -10.27932 -9.55989 -9.47289 -8.67869 -8.12099 -7.96139 -6.53907 -3.88025 2.05827 3.19000 3.20996 3.25470 4.10869 4.22193 4.29875 5.00078 5.07230 5.22170 5.27392 5.35992 5.37822 5.59520 5.74893 5.88939 5.96512 6.01162 6.11768 6.25542 6.48771 6.73974 6.88131 7.11886 7.29755 7.45165 8.00458 8.54206 9.08627 9.46256 10.01787 10.62937 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.055634 B = 0.006735 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.169866 B = 4156.141067 C = 4440.225736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.298 4.298 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.453 3.547 11 O -0.591 6.591 12 C -0.174 4.174 13 C -0.107 4.107 14 C -0.116 4.116 15 H 0.148 0.852 16 C -0.136 4.136 17 C 0.048 3.952 18 O -0.383 6.383 19 C 0.051 3.949 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.114 0.886 23 H 0.110 0.890 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -10.025 0.147 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.428 4.428 8 H 0.124 0.876 9 N -0.177 5.177 10 C 0.243 3.757 11 O -0.481 6.481 12 C -0.196 4.196 13 C -0.128 4.128 14 C -0.134 4.134 15 H 0.164 0.836 16 C -0.174 4.174 17 C -0.029 4.029 18 O -0.302 6.302 19 C -0.025 4.025 20 H 0.085 0.915 21 H 0.227 0.773 22 H 0.132 0.868 23 H 0.128 0.872 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.783 -9.838 -0.013 10.224 hybrid contribution -0.626 0.784 0.316 1.052 sum 2.157 -9.054 0.303 9.313 Atomic orbital electron populations 1.69583 1.06130 1.28693 1.48830 1.25370 0.95646 1.00051 0.96881 0.85867 0.78811 0.80056 0.79255 1.19693 1.20854 1.19724 1.19750 0.93641 0.82346 1.47069 0.87605 1.41915 1.09388 1.04928 1.61484 1.18074 0.87752 0.83936 0.85946 1.90426 1.13503 1.86480 1.57642 1.22826 0.99332 0.94114 1.03302 1.23082 0.95376 0.96627 0.97748 1.22591 0.92510 1.03674 0.94587 0.83553 1.22796 0.96693 0.99560 0.98351 1.23154 0.99554 0.98441 0.81716 1.88811 1.25378 1.92628 1.23404 1.23665 0.81891 0.96723 1.00226 0.91500 0.77270 0.86817 0.87247 0.91720 0.89938 0.90298 0.93160 0.93085 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.14 15 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.30 -8.19 9.68 -15.02 -0.15 -8.33 15 8 H 0.11 3.02 7.15 -52.49 -0.38 2.65 15 9 N -0.54 -13.79 5.27 -12.10 -0.06 -13.85 15 10 C 0.45 10.73 7.55 -12.73 -0.10 10.63 15 11 O -0.59 -15.42 12.73 5.22 0.07 -15.35 15 12 C -0.17 -3.22 10.01 -37.84 -0.38 -3.60 15 13 C -0.11 -1.74 8.81 -36.09 -0.32 -2.05 15 14 C -0.12 -2.00 2.55 -89.76 -0.23 -2.23 15 15 H 0.15 3.15 4.91 -52.72 -0.26 2.89 15 16 C -0.14 -2.12 6.58 -25.20 -0.17 -2.29 15 17 C 0.05 0.68 7.70 37.73 0.29 0.97 15 18 O -0.38 -6.31 11.52 -35.23 -0.41 -6.72 15 19 C 0.05 0.77 7.16 38.21 0.27 1.05 15 20 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15 21 H 0.39 9.55 7.88 -40.82 -0.32 9.23 15 22 H 0.11 1.80 8.06 -52.49 -0.42 1.37 15 23 H 0.11 1.42 8.06 -52.49 -0.42 0.99 15 24 H 0.06 0.90 7.85 -51.93 -0.41 0.49 15 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 28 H 0.05 0.66 8.04 -51.93 -0.42 0.25 15 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 251.82 15.07 3.79 3.79 Total: -1.00 -29.48 251.82 -5.23 -34.71 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.45 Total: 10.29 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.87 Total: -5.33 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.66 Total: -36.99 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.34 Total: -22.07 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.48 -5.23 -34.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113966.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.281 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds