Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31349 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48506 * 109.47151 * 240.00244 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47271 * 120.00011 * 3 2 1 7 7 C 1.39078 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36816 * 120.00277 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00303 * 179.97438 * 9 7 2 11 11 O 1.21664 * 119.99907 * 0.02562 * 10 9 7 12 12 C 1.46950 * 120.00178 * 180.02562 * 10 9 7 13 13 C 1.33119 * 120.00110 * 173.28942 * 12 10 9 14 14 C 1.50699 * 119.99862 * 348.17481 * 13 12 10 15 15 H 1.09001 * 110.80572 * 348.07539 * 14 13 12 16 16 C 1.54818 * 110.90955 * 111.70150 * 14 13 12 17 17 C 1.54097 * 104.18776 * 139.11259 * 16 14 13 18 18 O 1.43741 * 107.29488 * 2.03479 * 17 16 14 19 19 C 1.44383 * 106.97676 * 333.48287 * 18 17 16 20 20 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99649 * 359.97438 * 9 7 2 22 22 H 1.08000 * 119.99755 * 353.27881 * 12 10 9 23 23 H 1.07999 * 120.00616 * 168.18152 * 13 12 10 24 24 H 1.09000 * 110.48526 * 20.43643 * 16 14 13 25 25 H 1.09002 * 110.48748 * 257.78969 * 16 14 13 26 26 H 1.09001 * 109.87527 * 121.45325 * 17 16 14 27 27 H 1.09000 * 109.88214 * 242.60850 * 17 16 14 28 28 H 1.09002 * 110.61655 * 281.55919 * 19 18 17 29 29 H 1.08998 * 110.61729 * 158.56490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6963 -1.2126 5 1 1.2826 2.7464 -0.0006 6 1 3.1013 1.6963 1.2125 7 6 2.0088 -1.2045 0.0005 8 1 3.0888 -1.2045 0.0001 9 7 1.3247 -2.3893 0.0005 10 6 1.9985 -3.5566 0.0005 11 8 3.2152 -3.5566 0.0010 12 6 1.2637 -4.8292 0.0000 13 6 1.9225 -5.9781 -0.1347 14 6 3.3709 -5.9718 -0.5507 15 1 3.6686 -4.9839 -0.9021 16 6 4.2811 -6.4427 0.6098 17 6 5.3269 -7.3454 -0.0729 18 8 5.0494 -7.3299 -1.4831 19 6 3.6412 -7.0483 -1.6326 20 1 -0.4850 0.8401 -0.0004 21 1 0.3547 -2.3893 0.0005 22 1 0.1892 -4.8323 0.1090 23 1 1.4189 -6.9147 0.0539 24 1 3.7049 -7.0111 1.3399 25 1 4.7654 -5.5897 1.0850 26 1 6.3285 -6.9574 0.1120 27 1 5.2448 -8.3627 0.3098 28 1 3.0484 -7.9427 -1.4408 29 1 3.4321 -6.6540 -2.6271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113966.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -85.932910 kcal Electronic energy + Delta-G solvation = -13711.458194 eV Core-core repulsion = 11213.178659 eV Total energy + Delta-G solvation = -2498.279534 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72075 -39.72828 -36.31157 -34.83577 -33.35721 -31.69866 -29.79584 -27.22608 -24.02192 -23.27399 -21.87315 -20.55659 -19.49585 -17.90990 -17.36075 -16.80151 -16.27128 -15.95146 -15.72451 -15.27646 -14.75988 -14.17817 -14.11648 -13.49844 -13.45962 -12.99062 -12.68155 -12.46643 -12.39441 -12.14688 -11.94477 -11.75961 -11.41655 -10.64127 -10.22909 -9.97120 -9.78762 -8.51904 -5.96145 0.60110 1.40166 1.43837 1.51363 2.28137 2.48236 3.05275 3.29504 3.33803 3.83114 3.93021 4.16433 4.20581 4.37763 4.44672 4.54918 4.70278 4.80991 4.86501 4.94567 5.21016 5.35295 5.36850 5.44562 5.76768 5.96092 6.09937 6.58179 7.09318 7.53949 8.11732 8.65227 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.055634 B = 0.006735 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.169866 B = 4156.141067 C = 4440.225736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.562 5.562 10 C 0.452 3.548 11 O -0.622 6.622 12 C -0.205 4.205 13 C -0.065 4.065 14 C -0.131 4.131 15 H 0.099 0.901 16 C -0.133 4.133 17 C 0.049 3.951 18 O -0.405 6.405 19 C 0.058 3.942 20 H 0.280 0.720 21 H 0.396 0.604 22 H 0.145 0.855 23 H 0.163 0.837 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -11.974 0.348 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.099 0.901 9 N -0.196 5.196 10 C 0.243 3.757 11 O -0.512 6.512 12 C -0.226 4.226 13 C -0.086 4.086 14 C -0.149 4.149 15 H 0.116 0.884 16 C -0.171 4.171 17 C -0.028 4.028 18 O -0.325 6.325 19 C -0.018 4.018 20 H 0.089 0.911 21 H 0.230 0.770 22 H 0.162 0.838 23 H 0.180 0.820 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.333 -11.805 0.188 12.035 hybrid contribution -0.385 1.190 0.237 1.273 sum 1.949 -10.615 0.425 10.801 Atomic orbital electron populations 1.69641 1.06991 1.29638 1.49338 1.26120 0.96536 1.02606 0.96012 0.84961 0.77790 0.76408 0.79035 1.19649 1.19327 1.19582 1.19683 0.92904 0.84121 1.49752 0.90063 1.41953 1.09386 1.04993 1.63273 1.19079 0.87753 0.85343 0.83485 1.90444 1.15232 1.87443 1.58098 1.22758 1.00720 0.91891 1.07186 1.23578 0.94386 0.97848 0.92749 1.22496 0.93793 1.02288 0.96351 0.88384 1.22762 0.96973 0.99190 0.98189 1.23279 0.99160 0.99782 0.80546 1.88790 1.26216 1.92724 1.24743 1.23700 0.81804 0.97070 0.99265 0.91060 0.76994 0.83776 0.81989 0.89205 0.92793 0.90036 0.89939 0.89559 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.05 21.69 0.28 -49.30 15 2 C -0.01 -0.65 5.50 84.97 0.47 -0.19 15 3 Si 0.99 42.90 29.55 68.60 2.03 44.93 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 7 C -0.33 -19.16 9.68 84.12 0.81 -18.35 15 8 H 0.08 4.92 7.15 -2.91 -0.02 4.90 15 9 N -0.56 -29.44 5.27 -310.42 -1.64 -31.08 15 10 C 0.45 21.91 7.55 86.53 0.65 22.56 15 11 O -0.62 -33.80 12.73 -4.23 -0.05 -33.86 15 12 C -0.20 -7.22 10.01 23.40 0.23 -6.99 15 13 C -0.07 -1.89 8.81 24.54 0.22 -1.67 15 14 C -0.13 -4.31 2.55 -10.24 -0.03 -4.34 15 15 H 0.10 4.33 4.91 -14.98 -0.07 4.25 15 16 C -0.13 -3.91 6.58 31.59 0.21 -3.70 15 17 C 0.05 1.25 7.70 72.35 0.56 1.81 15 18 O -0.41 -12.44 11.52 -148.98 -1.72 -14.16 15 19 C 0.06 1.57 7.16 72.67 0.52 2.09 15 20 H 0.28 14.14 8.31 -92.70 -0.77 13.37 15 21 H 0.40 19.78 7.88 -92.71 -0.73 19.05 15 22 H 0.14 4.18 8.06 -2.91 -0.02 4.16 15 23 H 0.16 3.13 8.06 -2.91 -0.02 3.11 15 24 H 0.09 2.16 7.85 -2.39 -0.02 2.14 15 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 28 H 0.09 1.79 8.04 -2.39 -0.02 1.77 15 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 Total: -1.00 -66.45 251.82 2.91 -63.54 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.36 Total: 28.71 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 3.64 Total: -8.78 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.35 Total: -80.38 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.77 Total: -48.01 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -66.45 2.91 -63.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113966.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.397 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds