Wall clock time and date at job start Mon Mar 30 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47198 * 274.98826 * 3 2 1 5 5 H 1.48499 * 109.47154 * 34.99221 * 3 2 1 6 6 H 1.48500 * 109.46952 * 154.98796 * 3 2 1 7 7 C 1.40045 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99708 * 186.14214 * 7 2 1 9 9 C 1.46370 * 120.00131 * 6.14170 * 7 2 1 10 10 O 1.21687 * 120.00048 * 353.92683 * 9 7 2 11 11 N 1.34777 * 119.99632 * 173.64609 * 9 7 2 12 12 C 1.47257 * 136.20930 * 359.91385 * 11 9 7 13 13 C 1.53935 * 88.12073 * 153.82648 * 12 11 9 14 14 C 1.46018 * 136.20326 * 180.27241 * 11 9 7 15 15 C 1.53936 * 115.50235 * 88.54476 * 14 11 9 16 16 C 1.55196 * 101.83770 * 210.45189 * 15 14 11 17 17 O 1.44462 * 103.62558 * 36.27531 * 16 15 14 18 18 C 1.44015 * 107.03929 * 320.49858 * 17 16 15 19 19 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 20 20 H 1.09000 * 113.42989 * 268.61556 * 12 11 9 21 21 H 1.09004 * 113.42999 * 38.93585 * 12 11 9 22 22 H 1.08995 * 114.49169 * 271.86945 * 13 12 11 23 23 H 1.09005 * 114.18593 * 138.89287 * 13 12 11 24 24 H 1.09002 * 110.95878 * 328.58761 * 15 14 11 25 25 H 1.08996 * 110.95316 * 92.31593 * 15 14 11 26 26 H 1.09001 * 110.58733 * 277.74292 * 16 15 14 27 27 H 1.08995 * 110.72674 * 154.87465 * 16 15 14 28 28 H 1.09002 * 109.96947 * 266.90922 * 18 17 16 29 29 H 1.08998 * 110.00393 * 145.65780 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1073 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5869 1.4121 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0995 9 6 1.2813 -2.4767 -0.1367 10 8 0.0645 -2.4827 -0.1383 11 7 1.9611 -3.6333 -0.2660 12 6 3.3771 -4.0342 -0.3165 13 6 2.9531 -5.4141 0.2177 14 6 1.6200 -5.0442 -0.4245 15 6 1.4317 -5.5216 -1.8759 16 6 0.3819 -6.6519 -1.7056 17 8 -0.4789 -6.1613 -0.6544 18 6 0.3668 -5.5190 0.3184 19 1 -0.4850 0.8401 0.0004 20 1 3.7825 -4.0669 -1.3278 21 1 4.0103 -3.4764 0.3735 22 1 2.9219 -5.4878 1.3048 23 1 3.4622 -6.2527 -0.2574 24 1 1.0425 -4.7194 -2.5028 25 1 2.3644 -5.9137 -2.2813 26 1 0.8649 -7.5812 -1.4033 27 1 -0.1822 -6.7965 -2.6269 28 1 0.6429 -6.2288 1.0982 29 1 -0.1511 -4.6664 0.7577 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638290292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:22 Heat of formation + Delta-G solvation = -42.526665 kcal Electronic energy + Delta-G solvation = -14417.000492 eV Core-core repulsion = 11920.603194 eV Total energy + Delta-G solvation = -2496.397298 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27866 -37.16378 -35.68768 -32.51123 -30.32488 -28.71230 -27.76059 -25.97746 -22.58851 -22.16447 -21.09803 -18.11045 -16.74743 -16.00799 -15.65583 -15.05147 -14.74105 -14.30449 -13.80106 -13.58020 -12.71245 -12.49954 -12.09583 -11.71268 -11.58152 -11.35509 -11.13236 -10.97625 -10.81440 -10.58349 -10.47350 -10.24375 -9.74551 -9.26545 -8.88319 -7.63159 -7.33137 -6.23972 -4.68375 3.11423 3.18254 3.22100 3.96825 4.28384 4.35218 4.47173 4.85266 4.97889 5.30589 5.41204 5.48355 5.65139 5.67190 5.85976 5.95923 5.98739 6.03396 6.10920 6.22414 6.35748 6.41338 6.70090 6.88278 7.30747 7.40142 8.06985 8.44265 8.97733 9.55442 10.52941 10.72066 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.049654 B = 0.009511 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.766126 B = 2943.173631 C = 3264.741038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.582 3.418 10 O -0.566 6.566 11 N -0.647 5.647 12 C 0.110 3.890 13 C -0.146 4.146 14 C 0.127 3.873 15 C -0.153 4.153 16 C 0.049 3.951 17 O -0.377 6.377 18 C 0.049 3.951 19 H 0.270 0.730 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -9.154 -1.533 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.390 3.610 10 O -0.448 6.448 11 N -0.388 5.388 12 C -0.014 4.014 13 C -0.184 4.184 14 C 0.039 3.961 15 C -0.193 4.193 16 C -0.028 4.028 17 O -0.296 6.296 18 C -0.029 4.029 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.732 -8.800 -1.472 10.605 hybrid contribution 0.799 0.842 -0.155 1.171 sum 6.531 -7.959 -1.627 10.423 Atomic orbital electron populations 1.70023 1.07081 1.27470 1.34976 1.25725 0.94647 1.00327 0.92631 0.86310 0.80188 0.81272 0.78727 1.19754 1.20348 1.18847 1.20797 0.94080 0.88866 1.53628 0.91358 1.18034 0.86466 0.80287 0.76226 1.90635 1.13600 1.84752 1.55782 1.49952 1.06072 1.04177 1.78577 1.22571 0.87135 0.92311 0.99427 1.23453 0.96103 0.97822 1.01055 1.22217 0.94399 0.85586 0.93893 1.23217 0.99542 0.99081 0.97430 1.23463 0.91981 0.95630 0.91704 1.88920 1.31199 1.75343 1.34137 1.23305 0.91463 0.97168 0.90920 0.91958 0.91941 0.91373 0.89164 0.90606 0.89850 0.90323 0.92688 0.89565 0.92690 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.85 55.55 0.66 -22.55 15 2 C 0.09 2.44 5.49 -17.37 -0.10 2.34 15 3 Si 0.91 20.24 29.56 -169.99 -5.03 15.22 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.54 -15.41 9.38 -35.64 -0.33 -15.74 15 8 H 0.07 1.81 7.79 -52.49 -0.41 1.41 15 9 C 0.58 16.98 7.85 -12.99 -0.10 16.88 15 10 O -0.57 -18.73 14.41 5.20 0.07 -18.65 15 11 N -0.65 -15.05 3.49 -175.60 -0.61 -15.66 15 12 C 0.11 1.93 8.11 -10.03 -0.08 1.85 15 13 C -0.15 -2.16 7.60 -26.49 -0.20 -2.36 15 14 C 0.13 2.41 1.35 -138.61 -0.19 2.22 15 15 C -0.15 -2.56 6.44 -25.08 -0.16 -2.72 15 16 C 0.05 0.76 7.73 38.32 0.30 1.06 15 17 O -0.38 -7.59 11.54 -35.23 -0.41 -8.00 15 18 C 0.05 0.98 7.24 37.27 0.27 1.25 15 19 H 0.27 7.38 8.29 -40.82 -0.34 7.04 15 20 H 0.06 0.99 8.12 -51.93 -0.42 0.57 15 21 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.08 0.87 8.04 -51.93 -0.42 0.46 15 24 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 25 H 0.08 1.04 7.90 -51.93 -0.41 0.63 15 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.09 1.18 8.14 -51.93 -0.42 0.75 15 28 H 0.05 0.93 7.94 -51.93 -0.41 0.52 15 29 H 0.10 2.55 6.66 -51.93 -0.35 2.20 15 LS Contribution 248.81 15.07 3.75 3.75 Total: -1.00 -35.06 248.81 -5.82 -40.88 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.66 Total: 0.24 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.60 Total: 4.78 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.05 Total: -38.21 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.33 Total: -26.65 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -35.06 -5.82 -40.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638290292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.645 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds