Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27944 * 1 3 3 Si 1.86806 * 120.00154 * 2 1 4 4 H 1.48496 * 109.46931 * 269.99993 * 3 2 1 5 5 H 1.48498 * 109.47116 * 29.99936 * 3 2 1 6 6 H 1.48493 * 109.46981 * 150.00111 * 3 2 1 7 7 C 1.50694 * 119.99876 * 180.02562 * 2 1 3 8 8 C 1.52062 * 109.33350 * 264.99746 * 7 2 1 9 9 C 1.48193 * 114.91532 * 204.76903 * 8 7 2 10 10 C 1.55456 * 108.91717 * 297.41202 * 9 8 7 11 11 N 1.40352 * 110.29861 * 71.63262 * 10 9 8 12 12 C 1.44659 * 124.32058 * 104.12735 * 11 10 9 13 13 C 1.54794 * 105.94614 * 187.79617 * 12 11 10 14 14 C 1.54927 * 105.22800 * 1.42661 * 13 12 11 15 15 C 1.45960 * 124.16338 * 269.13543 * 11 10 9 16 16 H 1.08999 * 110.25244 * 276.32651 * 15 11 10 17 17 C 1.51356 * 109.33862 * 25.82439 * 7 2 1 18 18 H 1.09000 * 109.47065 * 29.68477 * 17 7 2 19 19 O 1.42894 * 109.47356 * 269.68187 * 17 7 2 20 20 H 0.97009 * 119.99748 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.20151 * 145.41581 * 7 2 1 22 22 H 1.09001 * 108.39211 * 83.36334 * 8 7 2 23 23 H 1.08999 * 108.39740 * 326.18116 * 8 7 2 24 24 H 1.08999 * 109.56402 * 177.57907 * 9 8 7 25 25 H 1.09000 * 109.65809 * 57.29829 * 9 8 7 26 26 H 1.09004 * 109.32917 * 311.38134 * 10 9 8 27 27 H 1.08999 * 109.19330 * 191.80347 * 10 9 8 28 28 H 1.09005 * 110.15383 * 68.67935 * 12 11 10 29 29 H 1.08996 * 110.21597 * 306.95129 * 12 11 10 30 30 H 1.08996 * 110.29494 * 242.49067 * 13 12 11 31 31 H 1.08999 * 110.37317 * 120.40156 * 13 12 11 32 32 H 1.08998 * 110.62583 * 97.25376 * 14 13 12 33 33 H 1.09010 * 110.61839 * 220.25132 * 14 13 12 34 34 H 0.96698 * 114.00704 * 59.99570 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2135 1.6178 0.0000 4 1 2.4610 2.0464 -1.4000 5 1 1.4110 2.6527 0.7000 6 1 3.5110 1.4401 0.7000 7 6 2.0329 -1.3051 -0.0006 8 6 2.3929 -1.6791 1.4286 9 6 3.5718 -2.5669 1.5635 10 6 3.2678 -3.9189 0.8589 11 7 3.2592 -3.7506 -0.5345 12 6 4.3277 -4.1724 -1.4137 13 6 3.9758 -3.6086 -2.8117 14 6 2.6570 -2.8204 -2.6124 15 6 2.0688 -3.4236 -1.3132 16 1 1.5049 -4.3289 -1.5386 17 6 1.1702 -2.3816 -0.6232 18 1 0.5034 -1.9324 -1.3592 19 8 0.3959 -3.0194 0.3944 20 1 -0.4850 0.8401 -0.0004 21 1 2.9461 -1.1916 -0.5848 22 1 1.5346 -2.1761 1.8807 23 1 2.5871 -0.7625 1.9856 24 1 3.7768 -2.7436 2.6194 25 1 4.4386 -2.0989 1.0969 26 1 2.2938 -4.2843 1.1843 27 1 4.0346 -4.6446 1.1300 28 1 4.3772 -5.2608 -1.4492 29 1 5.2792 -3.7645 -1.0727 30 1 3.8262 -4.4226 -3.5209 31 1 4.7647 -2.9429 -3.1619 32 1 2.8607 -1.7573 -2.4841 33 1 1.9813 -2.9842 -3.4519 34 1 -0.1948 -2.4212 0.8723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261305708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -22.176976 kcal Electronic energy + Delta-G solvation = -15793.316473 eV Core-core repulsion = 13419.978959 eV Total energy + Delta-G solvation = -2373.337514 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.139 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31262 -38.30365 -36.12003 -35.61535 -32.93752 -31.14582 -29.17957 -25.87733 -25.05444 -22.58530 -21.71281 -20.76154 -19.79401 -18.46086 -17.32531 -17.20897 -16.84012 -16.01610 -15.47631 -14.92324 -14.71041 -14.65940 -14.34460 -14.07861 -13.43427 -13.16074 -12.97586 -12.65183 -12.49351 -12.30624 -12.16011 -12.08948 -11.82197 -11.54155 -11.46449 -11.24894 -11.23058 -10.67107 -9.82982 -8.37288 0.72155 0.99668 1.32248 1.62726 1.78141 2.89428 3.26909 3.52063 3.76111 3.89708 4.02287 4.07741 4.14599 4.27818 4.36728 4.39678 4.57423 4.62007 4.73864 4.84719 4.94764 4.96330 4.99305 5.04195 5.08257 5.15236 5.22604 5.26257 5.28922 5.37981 5.43382 5.61901 6.62225 6.77651 6.92984 7.18084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.001 4.001 3 Si 0.925 3.075 4 H -0.238 1.238 5 H -0.247 1.247 6 H -0.232 1.232 7 C -0.084 4.084 8 C -0.102 4.102 9 C -0.135 4.135 10 C 0.153 3.847 11 N -0.686 5.686 12 C 0.126 3.874 13 C -0.131 4.131 14 C -0.129 4.129 15 C 0.155 3.845 16 H 0.057 0.943 17 C 0.126 3.874 18 H 0.069 0.931 19 O -0.560 6.560 20 H 0.338 0.662 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 1.681 -0.693 2.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.252 5.252 2 C -0.250 4.250 3 Si 0.741 3.259 4 H -0.161 1.161 5 H -0.170 1.170 6 H -0.154 1.154 7 C -0.103 4.103 8 C -0.141 4.141 9 C -0.175 4.175 10 C 0.027 3.973 11 N -0.415 5.415 12 C 0.001 3.999 13 C -0.169 4.169 14 C -0.168 4.168 15 C 0.050 3.950 16 H 0.075 0.925 17 C 0.065 3.935 18 H 0.087 0.913 19 O -0.367 6.367 20 H 0.155 0.845 21 H 0.119 0.881 22 H 0.095 0.905 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.610 1.282 -0.816 2.214 hybrid contribution -0.317 1.041 0.177 1.103 sum 1.292 2.323 -0.639 2.734 Atomic orbital electron populations 1.68091 1.10101 1.37185 1.09785 1.30479 0.96673 1.06206 0.91593 0.85811 0.81782 0.75423 0.82930 1.16102 1.16967 1.15361 1.20655 0.99022 0.91368 0.99279 1.20293 1.00122 0.99547 0.94137 1.21636 0.97666 0.97864 1.00358 1.20213 1.01201 0.94737 0.81146 1.47309 1.11562 1.79492 1.03143 1.21324 0.91518 0.97317 0.89777 1.22563 0.97518 0.99912 0.96902 1.22701 0.96946 1.00185 0.96922 1.21483 0.87421 0.95977 0.90139 0.92522 1.21666 0.91064 0.91160 0.89576 0.91344 1.86426 1.58305 1.39981 1.51940 0.84483 0.88144 0.90478 0.93042 0.91505 0.92118 0.91650 0.92929 0.94657 0.92422 0.91217 0.90925 0.90842 0.90716 0.77048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 0.13 11.95 56.23 0.67 0.80 16 2 C 0.00 0.00 4.60 -13.90 -0.06 -0.06 16 3 Si 0.92 -1.07 29.01 -169.99 -4.93 -6.00 16 4 H -0.24 0.11 7.11 56.52 0.40 0.51 16 5 H -0.25 0.09 7.11 56.52 0.40 0.49 16 6 H -0.23 0.13 7.11 56.52 0.40 0.53 16 7 C -0.08 0.01 1.43 -93.08 -0.13 -0.12 16 8 C -0.10 0.00 4.46 -29.55 -0.13 -0.13 16 9 C -0.14 0.00 5.95 -27.76 -0.17 -0.17 16 10 C 0.15 0.15 5.76 -5.91 -0.03 0.12 16 11 N -0.69 -0.67 2.45 -229.77 -0.56 -1.23 16 12 C 0.13 0.01 7.15 -4.08 -0.03 -0.02 16 13 C -0.13 0.12 6.98 -24.77 -0.17 -0.05 16 14 C -0.13 0.07 6.24 -24.74 -0.15 -0.08 16 15 C 0.16 0.16 3.13 -66.77 -0.21 -0.04 16 16 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 17 C 0.13 0.11 2.25 -27.08 -0.06 0.05 16 18 H 0.07 0.09 7.30 -51.93 -0.38 -0.29 16 19 O -0.56 -1.13 10.24 -35.23 -0.36 -1.49 16 20 H 0.34 -0.49 8.23 -40.82 -0.34 -0.82 16 21 H 0.10 -0.03 5.95 -51.93 -0.31 -0.34 16 22 H 0.08 0.05 5.90 -51.93 -0.31 -0.25 16 23 H 0.05 -0.02 7.35 -51.93 -0.38 -0.41 16 24 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.07 0.16 6.87 -51.93 -0.36 -0.20 16 27 H 0.05 0.04 8.02 -51.93 -0.42 -0.38 16 28 H 0.04 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.07 6.72 -51.93 -0.35 -0.42 16 33 H 0.07 -0.08 8.14 -51.92 -0.42 -0.50 16 34 H 0.38 0.25 7.98 45.56 0.36 0.62 16 LS Contribution 252.39 15.07 3.80 3.80 Total: 0.00 -1.93 252.39 -7.18 -9.11 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -4.65 Total: -4.48 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.15 Total: -0.52 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: 0.11 Total: -0.43 kcal Atomic # 8 Polarization: -1.13 SS G_CDS: -0.36 Total: -1.49 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -4.93 Total: -6.00 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -1.93 -7.18 -9.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.068 kcal (2) G-P(sol) polarization free energy of solvation -1.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds