Wall clock time and date at job start Mon Mar 30 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47283 * 2 1 4 4 N 1.46504 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99522 * 265.20679 * 4 3 2 6 6 H 1.08003 * 119.99480 * 145.22545 * 5 4 3 7 7 C 1.38946 * 120.00321 * 325.22057 * 5 4 3 8 8 N 1.31408 * 119.99870 * 338.93236 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 158.93742 * 7 5 4 10 10 H 1.48505 * 109.47446 * 59.99625 * 9 7 5 11 11 H 1.48503 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47002 * 299.99737 * 9 7 5 13 13 C 1.34770 * 119.99867 * 85.20399 * 4 3 2 14 14 O 1.21293 * 120.00246 * 0.02562 * 13 4 3 15 15 C 1.50702 * 119.99861 * 180.02562 * 13 4 3 16 16 H 1.09005 * 115.54755 * 34.42083 * 15 13 4 17 17 C 1.52999 * 117.50185 * 248.74577 * 15 13 4 18 18 C 1.53001 * 117.50005 * 180.08190 * 15 13 4 19 19 H 1.09000 * 117.50336 * 214.97752 * 18 15 13 20 20 C 1.53000 * 117.49848 * 0.02562 * 18 15 13 21 21 H 1.09001 * 109.47033 * 299.99903 * 1 2 3 22 22 H 1.09001 * 109.47162 * 59.99955 * 1 2 3 23 23 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 239.99567 * 2 1 3 25 25 H 1.08996 * 109.46736 * 120.00109 * 2 1 3 26 26 H 1.09001 * 109.47007 * 60.00081 * 3 2 1 27 27 H 1.09001 * 109.47059 * 300.00108 * 3 2 1 28 28 H 0.97002 * 120.00145 * 179.97438 * 8 7 5 29 29 H 1.09003 * 117.49511 * 0.02562 * 17 15 13 30 30 H 1.09001 * 117.49660 * 145.02015 * 17 15 13 31 31 H 1.09004 * 109.47434 * 59.99191 * 20 18 15 32 32 H 1.08999 * 109.47068 * 179.97438 * 20 18 15 33 33 H 1.09008 * 109.46777 * 299.99319 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5415 1.1823 6 1 5.1264 1.0168 1.3096 7 6 3.6828 2.3168 2.2173 8 7 2.8068 3.2622 1.9610 9 14 4.2450 2.0155 3.9730 10 1 5.7139 2.2145 4.0635 11 1 3.5599 2.9686 4.8826 12 1 3.9087 0.6243 4.3685 13 6 4.1784 1.3450 -1.1640 14 8 3.5715 1.2578 -2.2105 15 6 5.6854 1.3445 -1.1646 16 1 6.1557 0.8578 -0.3100 17 6 6.3922 2.5637 -1.7604 18 6 6.3914 1.2332 -2.5174 19 1 7.3262 0.6739 -2.5529 20 6 5.5132 1.1316 -3.7662 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 2.4517 3.8033 2.6835 29 1 5.7671 3.3664 -2.1516 30 1 7.3276 2.8789 -1.2980 31 1 4.8844 2.0188 -3.8415 32 1 6.1463 1.0591 -4.6506 33 1 4.8833 0.2446 -3.6962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:27 Heat of formation + Delta-G solvation = -19.535560 kcal Electronic energy + Delta-G solvation = -14587.882372 eV Core-core repulsion = 12228.315137 eV Total energy + Delta-G solvation = -2359.567235 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00372 -36.33801 -34.57269 -32.74294 -31.23488 -27.94835 -26.04992 -24.72449 -22.56013 -20.65750 -20.04158 -18.85538 -16.44725 -16.24939 -14.76931 -14.50196 -14.26403 -13.73698 -13.42247 -12.99917 -12.39603 -12.26631 -11.87870 -11.64167 -11.45258 -11.32495 -11.18750 -10.93827 -10.85028 -10.62245 -10.33700 -10.23156 -9.73337 -9.42130 -9.30298 -8.97700 -8.18240 -7.46620 -6.34044 -4.01182 3.12797 3.21273 3.23259 3.77818 4.10236 4.52190 4.84253 5.01339 5.41016 5.66328 5.76415 5.82443 5.88378 5.92124 6.08985 6.24066 6.39951 6.43821 6.51559 6.55582 6.58032 6.69216 6.73017 6.80612 6.86322 7.11485 7.19670 7.40438 7.53258 7.97978 8.41422 9.11572 9.59042 10.01419 10.67368 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.012944 C = 0.009190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.063563 B = 2162.640751 C = 3045.896986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.436 5.436 5 C -0.335 4.335 6 H 0.089 0.911 7 C 0.042 3.958 8 N -0.861 5.861 9 Si 0.913 3.087 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.600 6.600 15 C -0.150 4.150 16 H 0.112 0.888 17 C -0.153 4.153 18 C -0.142 4.142 19 H 0.097 0.903 20 C -0.100 4.100 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -3.045 -1.770 4.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.153 5.153 5 C -0.463 4.463 6 H 0.106 0.894 7 C -0.164 4.164 8 N -0.498 5.498 9 Si 0.739 3.261 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.285 3.715 14 O -0.487 6.487 15 C -0.171 4.171 16 H 0.130 0.870 17 C -0.190 4.190 18 C -0.160 4.160 19 H 0.115 0.885 20 C -0.157 4.157 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.903 -2.922 -2.139 4.091 hybrid contribution 0.338 -0.055 1.236 1.283 sum 2.241 -2.977 -0.902 3.834 Atomic orbital electron populations 1.21655 0.96651 1.00365 1.01357 1.21835 0.94649 0.99578 1.01223 1.21443 0.81468 0.94420 1.03536 1.43438 1.04672 1.62292 1.04849 1.19377 1.07828 1.28727 0.90355 0.89366 1.25305 0.97120 0.93633 1.00296 1.69920 1.30264 1.16592 1.33008 0.86232 0.79020 0.78399 0.82436 1.19779 1.20928 1.19868 1.19526 0.87686 0.80611 0.83654 1.90506 1.70053 1.56552 1.31572 1.22068 0.94185 1.03856 0.97035 0.86976 1.22876 1.01349 0.91471 1.03331 1.22313 1.00017 1.00387 0.93329 0.88515 1.21240 0.97438 1.03741 0.93257 0.93028 0.93163 0.93689 0.92929 0.92467 0.87515 0.93158 0.92069 0.88999 0.89119 0.91912 0.94800 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.13 -2.83 6.23 -26.73 -0.17 -3.00 16 3 C 0.11 2.81 4.91 -4.05 -0.02 2.79 16 4 N -0.44 -11.20 2.55 -114.82 -0.29 -11.49 16 5 C -0.33 -8.60 8.72 -14.93 -0.13 -8.73 16 6 H 0.09 2.17 6.52 -52.48 -0.34 1.82 16 7 C 0.04 1.06 4.95 -17.47 -0.09 0.98 16 8 N -0.86 -22.90 11.31 55.50 0.63 -22.27 16 9 Si 0.91 19.53 29.60 -169.99 -5.03 14.49 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.50 12.35 7.37 -10.99 -0.08 12.27 16 14 O -0.60 -15.69 12.76 5.55 0.07 -15.62 16 15 C -0.15 -3.17 5.29 -91.77 -0.49 -3.65 16 16 H 0.11 2.27 6.75 -51.93 -0.35 1.92 16 17 C -0.15 -2.83 9.88 -26.69 -0.26 -3.09 16 18 C -0.14 -2.54 6.41 -90.58 -0.58 -3.12 16 19 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 20 C -0.10 -1.82 8.43 37.16 0.31 -1.51 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.11 2.75 5.36 -51.93 -0.28 2.48 16 27 H 0.05 1.28 7.57 -51.93 -0.39 0.89 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.09 1.80 8.05 -51.93 -0.42 1.39 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.26 7.02 -51.93 -0.36 0.90 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.28 7.25 -51.92 -0.38 0.90 16 LS Contribution 271.61 15.07 4.09 4.09 Total: -1.00 -28.13 271.61 -6.71 -34.83 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.04 Total: 5.13 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.13 Total: -9.16 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.33 Total: -33.77 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.07 Total: -15.62 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.13 -6.71 -34.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.298 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds