Wall clock time and date at job start Mon Mar 30 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47283 * 2 1 4 4 N 1.46504 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99522 * 265.20679 * 4 3 2 6 6 H 1.08003 * 119.99480 * 145.22545 * 5 4 3 7 7 C 1.38946 * 120.00321 * 325.22057 * 5 4 3 8 8 N 1.31408 * 119.99870 * 338.93236 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 158.93742 * 7 5 4 10 10 H 1.48505 * 109.47446 * 59.99625 * 9 7 5 11 11 H 1.48503 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47002 * 299.99737 * 9 7 5 13 13 C 1.34770 * 119.99867 * 85.20399 * 4 3 2 14 14 O 1.21293 * 120.00246 * 0.02562 * 13 4 3 15 15 C 1.50702 * 119.99861 * 180.02562 * 13 4 3 16 16 H 1.09005 * 115.54755 * 34.42083 * 15 13 4 17 17 C 1.52999 * 117.50185 * 248.74577 * 15 13 4 18 18 C 1.53001 * 117.50005 * 180.08190 * 15 13 4 19 19 H 1.09000 * 117.50336 * 214.97752 * 18 15 13 20 20 C 1.53000 * 117.49848 * 0.02562 * 18 15 13 21 21 H 1.09001 * 109.47033 * 299.99903 * 1 2 3 22 22 H 1.09001 * 109.47162 * 59.99955 * 1 2 3 23 23 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 239.99567 * 2 1 3 25 25 H 1.08996 * 109.46736 * 120.00109 * 2 1 3 26 26 H 1.09001 * 109.47007 * 60.00081 * 3 2 1 27 27 H 1.09001 * 109.47059 * 300.00108 * 3 2 1 28 28 H 0.97002 * 120.00145 * 179.97438 * 8 7 5 29 29 H 1.09003 * 117.49511 * 0.02562 * 17 15 13 30 30 H 1.09001 * 117.49660 * 145.02015 * 17 15 13 31 31 H 1.09004 * 109.47434 * 59.99191 * 20 18 15 32 32 H 1.08999 * 109.47068 * 179.97438 * 20 18 15 33 33 H 1.09008 * 109.46777 * 299.99319 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5415 1.1823 6 1 5.1264 1.0168 1.3096 7 6 3.6828 2.3168 2.2173 8 7 2.8068 3.2622 1.9610 9 14 4.2450 2.0155 3.9730 10 1 5.7139 2.2145 4.0635 11 1 3.5599 2.9686 4.8826 12 1 3.9087 0.6243 4.3685 13 6 4.1784 1.3450 -1.1640 14 8 3.5715 1.2578 -2.2105 15 6 5.6854 1.3445 -1.1646 16 1 6.1557 0.8578 -0.3100 17 6 6.3922 2.5637 -1.7604 18 6 6.3914 1.2332 -2.5174 19 1 7.3262 0.6739 -2.5529 20 6 5.5132 1.1316 -3.7662 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 2.4517 3.8033 2.6835 29 1 5.7671 3.3664 -2.1516 30 1 7.3276 2.8789 -1.2980 31 1 4.8844 2.0188 -3.8415 32 1 6.1463 1.0591 -4.6506 33 1 4.8833 0.2446 -3.6962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:27 Heat of formation + Delta-G solvation = -34.608112 kcal Electronic energy + Delta-G solvation = -14588.535967 eV Core-core repulsion = 12228.315137 eV Total energy + Delta-G solvation = -2360.220830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82312 -38.03578 -36.44817 -34.49941 -33.14872 -29.46938 -27.81798 -26.62851 -24.21524 -22.30178 -21.65614 -20.74492 -18.26395 -18.07901 -16.58424 -16.24279 -16.04335 -15.46432 -15.16166 -14.67149 -13.98601 -13.93827 -13.52637 -13.27788 -13.15736 -13.06980 -12.89097 -12.59764 -12.35792 -12.26526 -12.06541 -11.98127 -11.54346 -11.02195 -10.95318 -10.72868 -10.07102 -9.43889 -8.27327 -6.01403 1.43306 1.48804 1.57318 1.96712 2.32078 2.82801 3.07362 3.20717 3.90815 4.10586 4.16156 4.19049 4.32519 4.48761 4.54101 4.59284 4.78342 4.92719 4.96111 4.98940 5.05626 5.07839 5.19143 5.20552 5.24093 5.36304 5.46862 5.57683 5.66686 6.05206 6.45436 7.15567 7.65103 8.07902 8.75004 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.012944 C = 0.009190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.063563 B = 2162.640751 C = 3045.896986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.115 3.885 4 N -0.451 5.451 5 C -0.351 4.351 6 H 0.097 0.903 7 C 0.000 4.000 8 N -0.895 5.895 9 Si 0.982 3.018 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.480 3.520 14 O -0.624 6.624 15 C -0.180 4.180 16 H 0.119 0.881 17 C -0.144 4.144 18 C -0.120 4.120 19 H 0.136 0.864 20 C -0.097 4.097 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.027 0.973 28 H 0.271 0.729 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -3.845 -1.127 5.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.008 4.008 4 N -0.168 5.168 5 C -0.479 4.479 6 H 0.115 0.885 7 C -0.202 4.202 8 N -0.533 5.533 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.271 3.729 14 O -0.513 6.513 15 C -0.201 4.201 16 H 0.137 0.863 17 C -0.182 4.182 18 C -0.139 4.139 19 H 0.154 0.846 20 C -0.154 4.154 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.332 -3.727 -1.501 5.220 hybrid contribution -0.127 0.228 0.957 0.992 sum 3.205 -3.499 -0.544 4.776 Atomic orbital electron populations 1.21610 0.93606 1.02364 1.01706 1.21714 0.97284 0.96897 1.00321 1.21403 0.81636 0.96234 1.01555 1.43730 1.05097 1.62521 1.05441 1.19710 1.08440 1.29130 0.90601 0.88536 1.26171 0.97061 0.92940 1.04011 1.70032 1.31531 1.17490 1.34233 0.85158 0.78941 0.78215 0.77102 1.18681 1.20953 1.19297 1.20289 0.89633 0.79884 0.83115 1.90479 1.71123 1.57482 1.32191 1.22058 0.91667 1.06797 0.99574 0.86270 1.22966 1.01680 0.90747 1.02799 1.22519 1.00434 0.99819 0.91089 0.84584 1.21176 0.97559 1.01367 0.95302 0.92540 0.92983 0.90828 0.94229 0.92735 0.88879 0.95469 0.91934 0.90942 0.85945 0.94709 0.91081 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.91 71.98 0.71 -3.85 16 2 C -0.12 -5.27 6.23 30.59 0.19 -5.08 16 3 C 0.12 5.83 4.91 86.37 0.42 6.26 16 4 N -0.45 -23.71 2.55 -635.55 -1.62 -25.33 16 5 C -0.35 -18.08 8.72 84.04 0.73 -17.35 16 6 H 0.10 4.69 6.52 -2.91 -0.02 4.67 16 7 C 0.00 0.02 4.95 84.93 0.42 0.45 16 8 N -0.90 -48.23 11.31 21.66 0.25 -47.98 16 9 Si 0.98 39.43 29.60 68.60 2.03 41.46 16 10 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 11 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 13 C 0.48 24.41 7.37 87.66 0.65 25.06 16 14 O -0.62 -33.74 12.76 -3.07 -0.04 -33.78 16 15 C -0.18 -7.44 5.29 -11.54 -0.06 -7.50 16 16 H 0.12 4.69 6.75 -2.38 -0.02 4.67 16 17 C -0.14 -5.11 9.88 30.62 0.30 -4.81 16 18 C -0.12 -4.02 6.41 -10.77 -0.07 -4.09 16 19 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 20 C -0.10 -3.43 8.43 71.98 0.61 -2.82 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.09 4.96 5.36 -2.39 -0.01 4.95 16 27 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 28 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.07 2.84 8.05 -2.39 -0.02 2.82 16 30 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.03 1.40 7.02 -2.38 -0.02 1.38 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.73 7.25 -2.38 -0.02 1.71 16 Total: -1.00 -61.49 271.61 5.60 -55.90 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.08 Total: 23.47 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 3.91 Total: -13.74 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.38 Total: -73.31 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.04 Total: -33.78 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -61.49 5.60 -55.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.289 kcal (2) G-P(sol) polarization free energy of solvation -61.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds