Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47645 * 2 1 4 4 N 1.46494 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.37100 * 120.00061 * 265.20315 * 4 3 2 6 6 H 1.07994 * 120.00266 * 145.22276 * 5 4 3 7 7 C 1.38946 * 119.99680 * 325.21864 * 5 4 3 8 8 N 1.31410 * 120.00774 * 338.93775 * 7 5 4 9 9 Si 1.86804 * 119.99815 * 158.93581 * 7 5 4 10 10 H 1.48506 * 109.46800 * 60.00379 * 9 7 5 11 11 H 1.48501 * 109.47110 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47246 * 300.00491 * 9 7 5 13 13 C 1.34784 * 120.00006 * 85.20276 * 4 3 2 14 14 O 1.21287 * 119.99996 * 359.97438 * 13 4 3 15 15 C 1.50697 * 119.99778 * 179.97438 * 13 4 3 16 16 H 1.09001 * 115.56133 * 34.31321 * 15 13 4 17 17 C 1.53003 * 117.49899 * 248.62088 * 15 13 4 18 18 C 1.52999 * 60.00072 * 252.51034 * 17 15 13 19 19 H 1.09001 * 117.49382 * 107.48370 * 18 17 15 20 20 C 1.52999 * 117.52160 * 252.51601 * 18 17 15 21 21 H 1.09002 * 109.47078 * 300.00163 * 1 2 3 22 22 H 1.09003 * 109.46648 * 59.99990 * 1 2 3 23 23 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47078 * 239.99837 * 2 1 3 25 25 H 1.08999 * 109.47001 * 120.00670 * 2 1 3 26 26 H 1.09002 * 109.47015 * 59.99799 * 3 2 1 27 27 H 1.08999 * 109.46967 * 300.00216 * 3 2 1 28 28 H 0.96995 * 120.00826 * 179.97438 * 8 7 5 29 29 H 1.08996 * 117.49695 * 0.02562 * 17 15 13 30 30 H 1.09006 * 117.49874 * 145.02370 * 17 15 13 31 31 H 1.08997 * 109.47170 * 128.62842 * 20 18 17 32 32 H 1.08999 * 109.47075 * 248.62914 * 20 18 17 33 33 H 1.08997 * 109.46520 * 8.63160 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5414 1.1823 6 1 5.1264 1.0167 1.3097 7 6 3.6830 2.3170 2.2171 8 7 2.8069 3.2623 1.9609 9 14 4.2452 2.0157 3.9729 10 1 5.7141 2.2147 4.0633 11 1 3.5602 2.9690 4.8825 12 1 3.9089 0.6245 4.3686 13 6 4.1785 1.3449 -1.1641 14 8 3.5716 1.2567 -2.2105 15 6 5.6854 1.3454 -1.1647 16 1 6.1563 0.8611 -0.3092 17 6 6.3913 2.5635 -1.7638 18 6 6.3914 1.2320 -2.5174 19 1 5.7657 1.1571 -3.4068 20 6 7.7039 0.4472 -2.5658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 2.4519 3.8035 2.6834 29 1 5.7656 3.3647 -2.1570 30 1 7.3265 2.8807 -1.3023 31 1 7.5251 -0.5798 -2.2473 32 1 8.0911 0.4493 -3.5847 33 1 8.4303 0.9129 -1.8999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = -24.206796 kcal Electronic energy + Delta-G solvation = -14419.577529 eV Core-core repulsion = 12059.807734 eV Total energy + Delta-G solvation = -2359.769795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.90722 -36.39331 -34.72909 -32.74863 -31.21200 -28.30713 -26.02898 -24.73874 -22.54304 -20.64160 -19.93216 -18.91396 -16.95172 -15.99675 -14.64563 -14.56613 -14.10435 -13.84832 -13.45582 -13.17030 -12.81171 -12.32422 -12.14242 -11.63550 -11.41290 -11.28900 -11.27651 -10.94257 -10.88017 -10.63610 -10.33693 -10.23281 -9.73949 -9.58822 -9.31083 -9.02861 -8.37545 -7.48329 -6.34649 -4.01976 3.12630 3.21164 3.23133 3.75438 4.09448 4.49944 4.78855 5.00920 5.44989 5.50161 5.69939 5.79229 5.82366 5.88590 6.06993 6.11074 6.18195 6.24218 6.32749 6.41689 6.55455 6.57533 6.72649 6.78117 6.86320 6.89040 7.16315 7.39947 7.52705 7.96544 8.40535 9.10506 9.57294 9.99786 10.66922 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.012581 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.362882 B = 2225.006064 C = 3125.101968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.114 3.886 4 N -0.434 5.434 5 C -0.335 4.335 6 H 0.089 0.911 7 C 0.042 3.958 8 N -0.861 5.861 9 Si 0.913 3.087 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.608 6.608 15 C -0.147 4.147 16 H 0.114 0.886 17 C -0.150 4.150 18 C -0.145 4.145 19 H 0.109 0.891 20 C -0.117 4.117 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -3.317 -1.218 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.151 5.151 5 C -0.463 4.463 6 H 0.107 0.893 7 C -0.163 4.163 8 N -0.497 5.497 9 Si 0.740 3.260 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.284 3.716 14 O -0.495 6.495 15 C -0.168 4.168 16 H 0.132 0.868 17 C -0.187 4.187 18 C -0.164 4.164 19 H 0.127 0.873 20 C -0.174 4.174 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.005 -3.196 -1.580 4.663 hybrid contribution 0.233 -0.032 1.143 1.167 sum 3.238 -3.227 -0.437 4.593 Atomic orbital electron populations 1.21652 0.96610 1.00389 1.01372 1.21839 0.94692 0.99543 1.01252 1.21459 0.81424 0.94477 1.03565 1.43410 1.04704 1.62175 1.04810 1.19380 1.07869 1.28773 0.90289 0.89303 1.25313 0.97100 0.93608 1.00324 1.69917 1.30222 1.16562 1.33046 0.86223 0.79031 0.78409 0.82372 1.19754 1.20919 1.19847 1.19558 0.87810 0.80596 0.83650 1.90496 1.70029 1.56835 1.32099 1.22069 0.93844 1.03838 0.97039 0.86848 1.22874 1.01422 0.91440 1.03010 1.22307 0.98315 0.99444 0.96347 0.87311 1.21331 0.95226 0.99620 1.01245 0.92996 0.93163 0.93661 0.92936 0.92411 0.87447 0.93160 0.92039 0.89089 0.88981 0.92503 0.92578 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.87 6.23 -26.73 -0.17 -3.03 16 3 C 0.11 2.83 4.91 -4.04 -0.02 2.81 16 4 N -0.43 -11.30 2.55 -114.82 -0.29 -11.59 16 5 C -0.34 -8.63 8.72 -14.93 -0.13 -8.76 16 6 H 0.09 2.18 6.52 -52.49 -0.34 1.84 16 7 C 0.04 1.07 4.95 -17.47 -0.09 0.98 16 8 N -0.86 -22.91 11.31 55.50 0.63 -22.29 16 9 Si 0.91 19.50 29.60 -169.99 -5.03 14.47 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.49 12.61 7.39 -10.98 -0.08 12.53 16 14 O -0.61 -16.72 15.92 5.55 0.09 -16.63 16 15 C -0.15 -3.11 5.02 -91.77 -0.46 -3.58 16 16 H 0.11 2.31 6.75 -51.93 -0.35 1.96 16 17 C -0.15 -2.78 9.88 -26.73 -0.26 -3.05 16 18 C -0.15 -2.61 5.92 -90.62 -0.54 -3.15 16 19 H 0.11 2.11 7.67 -51.93 -0.40 1.71 16 20 C -0.12 -1.64 10.19 37.16 0.38 -1.26 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.11 2.78 5.36 -51.93 -0.28 2.51 16 27 H 0.05 1.30 7.57 -51.93 -0.39 0.90 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -28.94 277.06 -6.54 -35.48 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.11 Total: 5.01 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.00 Total: -8.62 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.33 Total: -33.88 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.94 -6.54 -35.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.270 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds