Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 N 1.46499 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.37098 * 119.99974 * 264.74774 * 4 3 2 6 6 H 1.07998 * 119.99931 * 146.17180 * 5 4 3 7 7 C 1.38951 * 120.00360 * 326.17022 * 5 4 3 8 8 N 1.31413 * 119.99631 * 337.67740 * 7 5 4 9 9 Si 1.86800 * 120.00146 * 157.68159 * 7 5 4 10 10 H 1.48495 * 109.47005 * 89.99896 * 9 7 5 11 11 H 1.48501 * 109.46774 * 210.00102 * 9 7 5 12 12 H 1.48504 * 109.46902 * 329.99861 * 9 7 5 13 13 C 1.34773 * 119.99903 * 84.75148 * 4 3 2 14 14 O 1.21291 * 119.99941 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00238 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.47471 * 179.97438 * 15 13 4 17 17 C 1.53001 * 117.50144 * 243.61962 * 16 15 13 18 18 C 1.52999 * 60.00048 * 252.50813 * 17 16 15 19 19 H 1.08997 * 109.47039 * 299.99935 * 1 2 3 20 20 H 1.08996 * 109.47065 * 59.99867 * 1 2 3 21 21 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47039 * 240.00065 * 2 1 3 23 23 H 1.08996 * 109.47065 * 120.00133 * 2 1 3 24 24 H 1.09006 * 109.47040 * 60.00254 * 3 2 1 25 25 H 1.08996 * 109.47304 * 299.99986 * 3 2 1 26 26 H 0.96993 * 119.99573 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47075 * 300.00339 * 15 13 4 28 28 H 1.09004 * 109.46993 * 59.99627 * 15 13 4 29 29 H 1.09005 * 115.54621 * 29.33152 * 16 15 13 30 30 H 1.08997 * 117.49759 * 0.02562 * 17 16 15 31 31 H 1.08999 * 117.49692 * 145.01824 * 17 16 15 32 32 H 1.08998 * 117.50350 * 252.50762 * 18 17 16 33 33 H 1.09002 * 117.49553 * 107.48285 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5514 1.1832 6 1 5.1328 1.0401 1.3102 7 6 3.6713 2.3195 2.2185 8 7 2.8002 3.2687 1.9595 9 14 4.2123 2.0028 3.9781 10 1 5.4017 2.8362 4.2878 11 1 3.1072 2.3529 4.9063 12 1 4.5580 0.5676 4.1390 13 6 4.1793 1.3355 -1.1614 14 8 5.3922 1.3360 -1.1609 15 6 3.4264 1.2154 -2.4613 16 6 4.4211 1.1096 -3.6190 17 6 4.4214 2.2352 -4.6553 18 6 3.8532 0.8616 -5.0179 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6767 1.9564 0.8901 25 1 1.6767 1.9564 -0.8899 26 1 2.4379 3.8046 2.6822 27 1 2.8000 0.3237 -2.4372 28 1 2.7994 2.0961 -2.6007 29 1 5.3785 0.6489 -3.3755 30 1 3.7132 3.0513 -4.5121 31 1 5.3791 2.5153 -5.0937 32 1 4.4372 0.2381 -5.6949 33 1 2.7710 0.7739 -5.1133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048770141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = -21.189330 kcal Electronic energy + Delta-G solvation = -14367.564819 eV Core-core repulsion = 12007.925871 eV Total energy + Delta-G solvation = -2359.638947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.75013 -36.68066 -35.09359 -32.75814 -31.16144 -28.81900 -25.74448 -24.29108 -22.07873 -21.06197 -20.48322 -18.59218 -16.81136 -16.02234 -15.36739 -14.64246 -14.13523 -14.05519 -13.75575 -13.45337 -12.88528 -12.38214 -11.88354 -11.62578 -11.40194 -11.27638 -11.13783 -11.03591 -10.78428 -10.56654 -10.34553 -10.22704 -9.97458 -9.89251 -9.50036 -8.89436 -8.30442 -7.42735 -6.28854 -3.89091 3.19245 3.27798 3.33637 3.95714 4.16946 4.21793 4.81566 5.05344 5.19792 5.30354 5.36814 5.60953 5.69540 5.76616 5.85854 5.95525 6.07420 6.13276 6.17544 6.25677 6.36677 6.38852 6.45995 6.51868 6.65718 6.79082 6.96989 7.33045 7.63901 8.30271 8.57429 9.25084 9.48516 10.09318 10.74926 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.009844 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.274978 B = 2843.782428 C = 3427.738091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.102 3.898 4 N -0.444 5.444 5 C -0.306 4.306 6 H 0.091 0.909 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.915 3.085 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.583 6.583 15 C -0.105 4.105 16 C -0.126 4.126 17 C -0.181 4.181 18 C -0.189 4.189 19 H 0.053 0.947 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -3.887 -6.487 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.023 4.023 4 N -0.163 5.163 5 C -0.434 4.434 6 H 0.108 0.892 7 C -0.169 4.169 8 N -0.509 5.509 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.467 6.467 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.218 4.218 18 C -0.226 4.226 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.659 -3.734 -6.352 8.717 hybrid contribution 0.018 0.016 0.842 0.843 sum -4.641 -3.718 -5.509 8.107 Atomic orbital electron populations 1.21676 0.96399 1.00623 1.01540 1.21983 0.94834 0.99439 1.01667 1.21656 0.82128 0.94411 1.04089 1.43521 1.04563 1.63227 1.04966 1.19439 1.06700 1.28279 0.88942 0.89153 1.25308 0.97407 0.93783 1.00441 1.69926 1.31159 1.17032 1.32790 0.86121 0.78262 0.79100 0.82357 1.20347 1.20834 1.19452 1.20248 0.88074 0.82009 0.84837 1.90488 1.14256 1.55104 1.86835 1.21202 0.97621 1.02441 0.93260 1.22095 1.01192 1.02586 0.88593 1.22961 1.02367 0.92073 1.04402 1.22965 1.00479 0.99873 0.99322 0.92743 0.93205 0.93489 0.93180 0.91766 0.86864 0.93554 0.92337 0.90162 0.90314 0.86714 0.89122 0.89240 0.89269 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.57 6.17 -26.73 -0.16 -2.73 16 3 C 0.10 2.22 4.72 -4.04 -0.02 2.20 16 4 N -0.44 -11.45 2.56 -114.81 -0.29 -11.74 16 5 C -0.31 -8.62 8.98 -14.93 -0.13 -8.76 16 6 H 0.09 2.68 7.70 -52.49 -0.40 2.27 16 7 C 0.03 0.91 4.92 -17.47 -0.09 0.82 16 8 N -0.87 -23.63 11.33 55.50 0.63 -23.00 16 9 Si 0.92 20.81 29.61 -169.99 -5.03 15.77 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.46 11.53 7.59 -10.99 -0.08 11.45 16 14 O -0.58 -16.68 15.39 5.55 0.09 -16.59 16 15 C -0.11 -2.02 4.59 -27.88 -0.13 -2.14 16 16 C -0.13 -2.22 5.41 -90.62 -0.49 -2.71 16 17 C -0.18 -2.73 10.18 -26.73 -0.27 -3.01 16 18 C -0.19 -2.59 10.25 -26.73 -0.27 -2.86 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.87 6.59 -51.93 -0.34 0.53 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.11 2.75 5.34 -51.93 -0.28 2.47 16 25 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.08 1.38 6.53 -51.93 -0.34 1.05 16 28 H 0.08 1.44 7.14 -51.93 -0.37 1.06 16 29 H 0.11 2.25 7.30 -51.93 -0.38 1.87 16 30 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 273.53 15.07 4.12 4.12 Total: -1.00 -30.62 273.53 -6.74 -37.36 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.97 Total: 3.57 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.28 Total: -9.49 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.34 Total: -34.74 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.09 Total: -16.59 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.62 -6.74 -37.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048770141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.173 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds