Wall clock time and date at job start Mon Mar 30 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 6 6 H 1.08003 * 120.00092 * 120.00284 * 5 3 2 7 7 C 1.37879 * 120.00258 * 299.99637 * 5 3 2 8 8 N 1.31513 * 120.00028 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99858 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47354 * 89.99590 * 9 7 5 11 11 H 1.48501 * 109.46908 * 209.99697 * 9 7 5 12 12 H 1.48506 * 109.47061 * 329.99324 * 9 7 5 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 3 17 17 H 1.09000 * 115.54637 * 34.42075 * 16 14 13 18 18 C 1.52994 * 117.49943 * 248.75083 * 16 14 13 19 19 C 1.52991 * 117.50225 * 180.09120 * 16 14 13 20 20 H 1.08998 * 117.50043 * 214.98404 * 19 16 14 21 21 C 1.53001 * 117.50022 * 359.97130 * 19 16 14 22 22 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 23 23 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 25 25 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 26 26 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 27 27 H 0.97003 * 120.00277 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 29 29 H 1.09005 * 117.50098 * 359.97438 * 18 16 14 30 30 H 1.09004 * 117.49838 * 145.01994 * 18 16 14 31 31 H 1.09004 * 109.46910 * 60.00123 * 21 19 16 32 32 H 1.08998 * 109.47328 * 180.02562 * 21 19 16 33 33 H 1.09000 * 109.47555 * 300.01019 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8795 1.3359 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3271 2.2635 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8076 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3415 2.6275 -0.4362 16 6 0.0320 3.3278 -2.6587 17 1 0.4255 2.8712 -3.5669 18 6 -0.1292 4.8492 -2.6456 19 6 -1.3644 3.9490 -2.7281 20 1 -1.8896 3.9013 -3.6820 21 6 -2.2472 3.8435 -1.4830 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.8770 0.4811 2.1125 28 1 2.2719 2.1231 -1.9978 29 1 0.0543 5.3668 -1.7040 30 1 0.1577 5.3935 -3.5454 31 1 -1.7541 4.3365 -0.6451 32 1 -3.2058 4.3253 -1.6753 33 1 -2.4107 2.7933 -1.2413 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:34 Heat of formation + Delta-G solvation = -18.854133 kcal Electronic energy + Delta-G solvation = -14524.900886 eV Core-core repulsion = 12165.363200 eV Total energy + Delta-G solvation = -2359.537686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65569 -36.79981 -34.89817 -32.35973 -31.48477 -28.43510 -27.44379 -24.02824 -22.48505 -21.07222 -19.98207 -19.40193 -17.16217 -16.18467 -15.64989 -15.06392 -14.46422 -14.02347 -13.39416 -13.10868 -12.83830 -12.42079 -12.31460 -11.98541 -11.87509 -11.66026 -11.32465 -11.06365 -10.86365 -10.61252 -10.06285 -9.90065 -9.87116 -9.50471 -9.20523 -8.83879 -8.73759 -7.99981 -6.20166 -4.22354 3.09711 3.24085 3.35805 3.41114 3.89559 4.12988 4.32424 4.82204 5.03798 5.12656 5.13870 5.46692 5.52729 5.82141 5.96831 5.99158 6.04484 6.06055 6.16623 6.21297 6.29359 6.66866 6.72024 6.74337 6.87808 6.98796 7.30658 7.35601 7.55362 8.19735 8.58872 8.78235 9.03595 9.41258 10.91986 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.009151 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.809812 B = 3059.170843 C = 3367.113666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.531 3.469 15 O -0.546 6.546 16 C -0.190 4.190 17 H 0.116 0.884 18 C -0.154 4.154 19 C -0.123 4.123 20 H 0.104 0.896 21 C -0.109 4.109 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 3.569 -7.488 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.316 3.684 15 O -0.426 6.426 16 C -0.211 4.211 17 H 0.134 0.866 18 C -0.192 4.192 19 C -0.142 4.142 20 H 0.122 0.878 21 C -0.165 4.165 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.045 3.480 -6.678 13.368 hybrid contribution 0.128 -0.599 0.241 0.658 sum -10.917 2.882 -6.438 12.997 Atomic orbital electron populations 1.21876 0.96920 0.98940 1.02316 1.22282 0.94394 1.00019 1.01002 1.19123 0.95519 0.88442 0.82991 0.93408 1.21074 0.88718 1.39678 1.07793 0.90239 1.24842 0.94873 0.95175 0.97692 1.69871 1.08690 1.44592 1.29841 0.86890 0.80956 0.79931 0.80860 1.20279 1.22190 1.18476 1.46138 1.14639 1.55958 1.17835 1.19493 0.82338 0.78690 0.87832 1.90653 1.51332 1.59966 1.40611 1.22371 1.02925 0.97185 0.98641 0.86556 1.23041 1.01873 0.90696 1.03578 1.22310 0.89008 1.02264 1.00628 0.87761 1.21332 0.96916 1.02907 0.95389 0.92803 0.95102 0.92903 0.92384 0.92871 0.92312 0.77274 0.88309 0.88347 0.91624 0.93968 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.15 0.32 -2.59 16 2 C -0.14 -3.11 5.11 -26.74 -0.14 -3.24 16 3 C 0.24 5.79 1.83 -69.09 -0.13 5.67 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.53 -14.57 9.31 -34.44 -0.32 -14.89 16 6 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.88 21.95 24.41 -169.99 -4.15 17.80 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 13 N -0.70 -13.95 5.03 -54.94 -0.28 -14.22 16 14 C 0.53 9.88 6.15 -10.98 -0.07 9.82 16 15 O -0.55 -11.52 10.23 5.55 0.06 -11.46 16 16 C -0.19 -2.69 6.19 -91.78 -0.57 -3.25 16 17 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.15 -1.91 9.88 -26.70 -0.26 -2.18 16 19 C -0.12 -1.56 6.41 -90.59 -0.58 -2.14 16 20 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.11 -1.52 8.43 37.16 0.31 -1.21 16 22 H 0.05 1.07 5.63 -51.93 -0.29 0.78 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 1.26 3.21 -51.93 -0.17 1.09 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 7.06 8.54 -40.82 -0.35 6.71 16 29 H 0.10 1.34 8.05 -51.93 -0.42 0.92 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.08 7.26 -51.93 -0.38 0.70 16 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -30.14 260.70 -6.06 -36.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.86 Total: 5.53 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.53 Total: -11.92 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.50 Total: -40.08 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.06 Total: -11.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.15 Total: 17.80 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.14 -6.06 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.342 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds