Wall clock time and date at job start Mon Mar 30 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 6 6 H 1.08003 * 120.00092 * 120.00284 * 5 3 2 7 7 C 1.37879 * 120.00258 * 299.99637 * 5 3 2 8 8 N 1.31513 * 120.00028 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99858 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47354 * 89.99590 * 9 7 5 11 11 H 1.48501 * 109.46908 * 209.99697 * 9 7 5 12 12 H 1.48506 * 109.47061 * 329.99324 * 9 7 5 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 3 17 17 H 1.09000 * 115.54637 * 34.42075 * 16 14 13 18 18 C 1.52994 * 117.49943 * 248.75083 * 16 14 13 19 19 C 1.52991 * 117.50225 * 180.09120 * 16 14 13 20 20 H 1.08998 * 117.50043 * 214.98404 * 19 16 14 21 21 C 1.53001 * 117.50022 * 359.97130 * 19 16 14 22 22 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 23 23 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 25 25 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 26 26 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 27 27 H 0.97003 * 120.00277 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 29 29 H 1.09005 * 117.50098 * 359.97438 * 18 16 14 30 30 H 1.09004 * 117.49838 * 145.01994 * 18 16 14 31 31 H 1.09004 * 109.46910 * 60.00123 * 21 19 16 32 32 H 1.08998 * 109.47328 * 180.02562 * 21 19 16 33 33 H 1.09000 * 109.47555 * 300.01019 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8795 1.3359 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3271 2.2635 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8076 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3415 2.6275 -0.4362 16 6 0.0320 3.3278 -2.6587 17 1 0.4255 2.8712 -3.5669 18 6 -0.1292 4.8492 -2.6456 19 6 -1.3644 3.9490 -2.7281 20 1 -1.8896 3.9013 -3.6820 21 6 -2.2472 3.8435 -1.4830 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.8770 0.4811 2.1125 28 1 2.2719 2.1231 -1.9978 29 1 0.0543 5.3668 -1.7040 30 1 0.1577 5.3935 -3.5454 31 1 -1.7541 4.3365 -0.6451 32 1 -3.2058 4.3253 -1.6753 33 1 -2.4107 2.7933 -1.2413 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:33 Heat of formation + Delta-G solvation = -39.387279 kcal Electronic energy + Delta-G solvation = -14525.791270 eV Core-core repulsion = 12165.363200 eV Total energy + Delta-G solvation = -2360.428070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.08635 -38.17695 -36.52290 -34.39232 -33.20269 -29.81996 -29.09767 -25.52555 -24.24319 -22.31816 -21.53726 -20.93230 -18.92255 -17.69955 -17.49859 -16.45131 -16.09506 -15.63724 -15.04899 -14.84262 -14.24145 -13.92228 -13.73727 -13.64308 -13.46367 -13.00946 -12.95249 -12.76492 -12.39516 -12.30926 -11.87114 -11.38711 -11.25067 -11.07854 -10.93651 -10.87089 -10.31469 -9.70066 -8.39766 -6.45104 1.25049 1.33096 1.43196 1.73259 2.24373 2.49535 2.93779 2.98950 3.76345 3.94825 4.02571 4.23278 4.28352 4.32069 4.49681 4.53607 4.81258 4.89028 4.94548 4.99424 5.03374 5.10263 5.12964 5.22740 5.25373 5.41650 5.51016 5.60838 5.73704 6.15307 6.57252 6.96426 7.19000 7.55762 8.75570 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.009151 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.809812 B = 3059.170843 C = 3367.113666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.260 1.260 11 H -0.292 1.292 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.525 3.475 15 O -0.574 6.574 16 C -0.202 4.202 17 H 0.145 0.855 18 C -0.144 4.144 19 C -0.115 4.115 20 H 0.139 0.861 21 C -0.107 4.107 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.270 0.730 28 H 0.404 0.596 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 3.519 -8.963 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.037 0.963 5 C -0.573 4.573 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.350 5.350 14 C 0.313 3.687 15 O -0.455 6.455 16 C -0.223 4.223 17 H 0.163 0.837 18 C -0.181 4.181 19 C -0.134 4.134 20 H 0.157 0.843 21 C -0.165 4.165 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.239 0.761 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.749 3.437 -8.183 15.534 hybrid contribution 0.652 -0.498 0.667 1.057 sum -12.096 2.939 -7.516 14.541 Atomic orbital electron populations 1.21748 0.95098 1.00447 1.01624 1.22198 0.95938 0.98515 1.00877 1.18736 0.93014 0.89617 0.84064 0.96263 1.21324 0.90518 1.38502 1.06911 0.92710 1.25564 0.95764 0.95905 0.99879 1.69978 1.10260 1.46183 1.30888 0.86011 0.79229 0.79918 0.78316 1.18538 1.21974 1.18630 1.46023 1.15757 1.56437 1.16814 1.20294 0.81225 0.77876 0.89256 1.90649 1.51916 1.60734 1.42216 1.22376 1.04772 0.98277 0.96832 0.83750 1.23153 1.01238 0.89471 1.04237 1.22484 0.88375 1.01238 1.01281 0.84282 1.21269 0.98380 1.01415 0.95388 0.92562 0.92410 0.94539 0.91448 0.93960 0.92069 0.76138 0.90192 0.84941 0.94342 0.91413 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.14 -5.99 5.11 30.59 0.16 -5.83 16 3 C 0.25 12.00 1.83 44.24 0.08 12.08 16 4 H 0.02 1.04 6.64 -2.39 -0.02 1.03 16 5 C -0.53 -29.61 9.31 25.60 0.24 -29.37 16 6 H 0.05 3.23 7.98 -2.91 -0.02 3.21 16 7 C 0.03 1.63 5.45 84.66 0.46 2.09 16 8 N -0.93 -56.66 13.96 21.45 0.30 -56.37 16 9 Si 0.94 45.49 24.41 68.60 1.67 47.17 16 10 H -0.26 -11.84 6.83 99.48 0.68 -11.16 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.65 6.53 99.48 0.65 -12.00 16 13 N -0.70 -27.73 5.03 -446.11 -2.24 -29.97 16 14 C 0.53 19.10 6.15 87.66 0.54 19.64 16 15 O -0.57 -24.20 10.23 -3.04 -0.03 -24.23 16 16 C -0.20 -5.16 6.19 -11.54 -0.07 -5.23 16 17 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.14 -3.13 9.88 30.61 0.30 -2.83 16 19 C -0.12 -2.54 6.41 -10.77 -0.07 -2.61 16 20 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.11 -2.84 8.43 71.98 0.61 -2.24 16 22 H 0.06 2.15 5.63 -2.39 -0.01 2.14 16 23 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.04 1.52 7.84 -2.38 -0.02 1.50 16 25 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.04 1.94 3.21 -2.39 -0.01 1.93 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.40 14.22 8.54 -92.71 -0.79 13.43 16 29 H 0.08 2.06 8.05 -2.38 -0.02 2.05 16 30 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.04 1.20 7.02 -2.38 -0.02 1.19 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.45 7.26 -2.39 -0.02 1.43 16 Total: -1.00 -65.86 260.70 2.78 -63.07 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.22 Total: 19.16 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 2.86 Total: -18.83 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -1.94 Total: -86.34 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.03 Total: -24.23 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.17 kcal Total: -65.86 2.78 -63.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.686 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds