Wall clock time and date at job start Mon Mar 30 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.53007 * 109.47211 * 184.99930 * 3 2 1 6 6 C 1.52998 * 109.46975 * 175.00015 * 5 3 2 7 7 C 1.52998 * 117.49753 * 243.62338 * 6 5 3 8 8 C 1.53004 * 60.00204 * 252.51190 * 7 6 5 9 9 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 10 10 C 1.34777 * 119.99873 * 275.00296 * 9 3 2 11 11 O 1.21695 * 119.99811 * 359.97438 * 10 9 3 12 12 C 1.46376 * 120.00195 * 180.02562 * 10 9 3 13 13 H 1.07999 * 119.99764 * 359.97438 * 12 10 9 14 14 C 1.40037 * 120.00112 * 180.02562 * 12 10 9 15 15 N 1.30672 * 120.00499 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00016 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47477 * 89.99818 * 16 14 12 18 18 H 1.48502 * 109.47495 * 209.99923 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99545 * 16 14 12 20 20 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 23 23 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 24 24 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 25 25 H 1.08995 * 109.46869 * 294.99887 * 5 3 2 26 26 H 1.09000 * 109.46715 * 55.00379 * 5 3 2 27 27 H 1.08993 * 115.55077 * 29.33356 * 6 5 3 28 28 H 1.09002 * 117.50013 * 0.02562 * 7 6 5 29 29 H 1.09003 * 117.50066 * 145.02691 * 7 6 5 30 30 H 1.08998 * 117.49640 * 252.51235 * 8 7 6 31 31 H 1.08999 * 117.50191 * 107.48565 * 8 7 6 32 32 H 0.96995 * 120.00050 * 94.72411 * 9 3 2 33 33 H 0.97000 * 120.00986 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 6 4.0644 2.8850 -0.2511 7 6 4.7632 3.2795 -1.5538 8 6 5.5779 3.1088 -0.2700 9 7 1.6524 2.0975 1.2519 10 6 0.4351 2.6643 1.3670 11 8 -0.3420 2.6325 0.4310 12 6 0.0480 3.3193 2.6176 13 1 0.7378 3.3479 3.4481 14 6 -1.2170 3.9078 2.7374 15 7 -2.0518 3.8727 1.7328 16 14 -1.7112 4.7430 4.3336 17 1 -1.3235 6.1756 4.2834 18 1 -3.1811 4.6341 4.5149 19 1 -1.0220 4.0832 5.4715 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0029 0.9837 0.7596 26 1 3.8570 0.8801 -1.0113 27 1 3.4502 3.6400 0.2395 28 1 4.8666 2.5128 -2.3216 29 1 4.6087 4.2943 -1.9205 30 1 5.9592 4.0112 0.2078 31 1 6.2176 2.2296 -0.1930 32 1 2.2704 2.1197 1.9991 33 1 -2.9280 4.2807 1.8156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069669790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:17 Heat of formation + Delta-G solvation = -35.194709 kcal Electronic energy + Delta-G solvation = -14277.862936 eV Core-core repulsion = 11917.616670 eV Total energy + Delta-G solvation = -2360.246266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.35642 -36.81044 -34.38453 -32.33406 -30.92028 -28.96902 -26.06684 -23.56576 -22.20932 -20.73772 -20.02316 -19.18394 -17.13802 -15.50810 -15.25762 -14.89433 -14.33603 -13.94096 -13.42535 -12.93982 -12.38725 -12.33070 -11.78959 -11.49495 -11.36178 -11.08418 -11.04642 -10.88012 -10.62097 -10.50369 -10.37602 -10.11690 -9.95069 -9.82758 -9.55021 -8.80136 -7.50741 -7.31351 -6.12835 -4.57996 3.16067 3.23245 3.26272 4.01308 4.14696 4.64868 4.83343 4.97809 5.13028 5.19648 5.57010 5.64045 5.75455 5.82073 5.91286 6.00697 6.01745 6.07685 6.18654 6.25781 6.32899 6.58291 6.64025 6.74828 6.78499 7.03383 7.43471 7.48328 8.02398 8.22645 8.41043 9.08258 9.64398 10.66329 10.87353 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.008800 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.444695 B = 3180.902378 C = 3728.657741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.156 3.844 4 H 0.076 0.924 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.184 4.184 8 C -0.187 4.187 9 N -0.759 5.759 10 C 0.557 3.443 11 O -0.574 6.574 12 C -0.548 4.548 13 H 0.065 0.935 14 C 0.089 3.911 15 N -0.768 5.768 16 Si 0.903 3.097 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.378 0.622 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 -3.254 -1.719 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.050 3.950 4 H 0.094 0.906 5 C -0.131 4.131 6 C -0.160 4.160 7 C -0.221 4.221 8 C -0.224 4.224 9 N -0.414 5.414 10 C 0.361 3.639 11 O -0.456 6.456 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.397 5.397 16 Si 0.728 3.272 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.045 0.955 21 H 0.094 0.906 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.209 0.791 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.568 -3.225 -2.505 10.403 hybrid contribution 0.107 0.441 1.162 1.247 sum 9.675 -2.784 -1.343 10.157 Atomic orbital electron populations 1.21766 0.94598 0.98720 1.04586 1.21938 0.97595 0.97235 0.99947 1.20548 0.91472 0.92435 0.90585 0.90633 1.21464 0.96293 0.93894 1.01435 1.22399 0.93828 0.99015 1.00718 1.22988 1.05322 1.02366 0.91435 1.22929 0.94639 1.02792 1.02064 1.46175 1.18873 1.62557 1.13794 1.18096 0.79078 0.77790 0.88958 1.90605 1.51036 1.62651 1.41333 1.20907 1.00632 1.38126 0.98832 0.91719 1.25663 0.96010 0.94594 0.96775 1.70013 1.05951 1.33903 1.29854 0.86447 0.78011 0.79933 0.82780 1.19870 1.20545 1.19017 0.95502 0.90582 0.92681 0.93280 0.93059 0.91754 0.91706 0.86951 0.89177 0.89234 0.89245 0.89281 0.79116 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.63 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.16 2.95 2.24 -67.92 -0.15 2.80 16 4 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 5 C -0.09 -1.37 5.04 -26.73 -0.13 -1.51 16 6 C -0.14 -2.10 5.61 -90.62 -0.51 -2.61 16 7 C -0.18 -2.39 10.18 -26.73 -0.27 -2.66 16 8 C -0.19 -2.30 10.25 -26.73 -0.27 -2.57 16 9 N -0.76 -16.52 4.45 -55.21 -0.25 -16.77 16 10 C 0.56 15.32 6.31 -12.99 -0.08 15.24 16 11 O -0.57 -17.68 12.15 5.19 0.06 -17.62 16 12 C -0.55 -15.33 9.54 -35.64 -0.34 -15.67 16 13 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 16 Si 0.90 20.25 29.56 -169.99 -5.02 15.23 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.08 1.92 5.65 -51.93 -0.29 1.62 16 22 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 27 H 0.11 1.97 7.69 -51.93 -0.40 1.57 16 28 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.38 7.42 8.58 -40.82 -0.35 7.07 16 33 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 LS Contribution 274.48 15.07 4.14 4.14 Total: -1.00 -31.56 274.48 -7.28 -38.84 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.17 Total: 8.09 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.69 Total: -9.67 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.41 Total: -39.00 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.06 Total: -17.62 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.56 -7.28 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.648 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds