Wall clock time and date at job start Mon Mar 30 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.53007 * 109.47211 * 184.99930 * 3 2 1 6 6 C 1.52998 * 109.46975 * 175.00015 * 5 3 2 7 7 C 1.52998 * 117.49753 * 243.62338 * 6 5 3 8 8 C 1.53004 * 60.00204 * 252.51190 * 7 6 5 9 9 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 10 10 C 1.34777 * 119.99873 * 275.00296 * 9 3 2 11 11 O 1.21695 * 119.99811 * 359.97438 * 10 9 3 12 12 C 1.46376 * 120.00195 * 180.02562 * 10 9 3 13 13 H 1.07999 * 119.99764 * 359.97438 * 12 10 9 14 14 C 1.40037 * 120.00112 * 180.02562 * 12 10 9 15 15 N 1.30672 * 120.00499 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00016 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47477 * 89.99818 * 16 14 12 18 18 H 1.48502 * 109.47495 * 209.99923 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99545 * 16 14 12 20 20 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 23 23 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 24 24 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 25 25 H 1.08995 * 109.46869 * 294.99887 * 5 3 2 26 26 H 1.09000 * 109.46715 * 55.00379 * 5 3 2 27 27 H 1.08993 * 115.55077 * 29.33356 * 6 5 3 28 28 H 1.09002 * 117.50013 * 0.02562 * 7 6 5 29 29 H 1.09003 * 117.50066 * 145.02691 * 7 6 5 30 30 H 1.08998 * 117.49640 * 252.51235 * 8 7 6 31 31 H 1.08999 * 117.50191 * 107.48565 * 8 7 6 32 32 H 0.96995 * 120.00050 * 94.72411 * 9 3 2 33 33 H 0.97000 * 120.00986 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 6 4.0644 2.8850 -0.2511 7 6 4.7632 3.2795 -1.5538 8 6 5.5779 3.1088 -0.2700 9 7 1.6524 2.0975 1.2519 10 6 0.4351 2.6643 1.3670 11 8 -0.3420 2.6325 0.4310 12 6 0.0480 3.3193 2.6176 13 1 0.7378 3.3479 3.4481 14 6 -1.2170 3.9078 2.7374 15 7 -2.0518 3.8727 1.7328 16 14 -1.7112 4.7430 4.3336 17 1 -1.3235 6.1756 4.2834 18 1 -3.1811 4.6341 4.5149 19 1 -1.0220 4.0832 5.4715 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0029 0.9837 0.7596 26 1 3.8570 0.8801 -1.0113 27 1 3.4502 3.6400 0.2395 28 1 4.8666 2.5128 -2.3216 29 1 4.6087 4.2943 -1.9205 30 1 5.9592 4.0112 0.2078 31 1 6.2176 2.2296 -0.1930 32 1 2.2704 2.1197 1.9991 33 1 -2.9280 4.2807 1.8156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069669790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:17 Heat of formation + Delta-G solvation = -55.966841 kcal Electronic energy + Delta-G solvation = -14278.763683 eV Core-core repulsion = 11917.616670 eV Total energy + Delta-G solvation = -2361.147014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01502 -38.25979 -36.10334 -34.46579 -32.72997 -30.46500 -28.12866 -25.07460 -23.19336 -22.56235 -21.23742 -20.94984 -19.10628 -17.45890 -16.72335 -16.46496 -15.79110 -15.70637 -14.88119 -14.47503 -14.31612 -13.73732 -13.60600 -13.11816 -12.84366 -12.70560 -12.56345 -12.42075 -12.30539 -12.13076 -11.96067 -11.87803 -11.58134 -10.99654 -10.87934 -10.67619 -9.67672 -9.22251 -8.22591 -6.77961 1.39252 1.40606 1.54925 2.26062 2.55729 2.96021 3.27761 3.67239 3.75487 4.03009 4.12576 4.30192 4.33328 4.39284 4.55380 4.74134 4.80780 4.90000 4.90260 5.03120 5.07917 5.17011 5.26347 5.30416 5.35927 5.42896 5.46498 5.64907 5.98031 6.32835 6.47490 6.93404 7.69456 8.59537 8.78775 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.008800 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.444695 B = 3180.902378 C = 3728.657741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.154 3.846 4 H 0.036 0.964 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.184 4.184 8 C -0.163 4.163 9 N -0.746 5.746 10 C 0.546 3.454 11 O -0.617 6.617 12 C -0.578 4.578 13 H 0.080 0.920 14 C 0.031 3.969 15 N -0.821 5.821 16 Si 0.990 3.010 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.251 1.251 20 H 0.052 0.948 21 H 0.028 0.972 22 H 0.027 0.973 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.486 -4.007 -0.736 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.048 3.952 4 H 0.054 0.946 5 C -0.115 4.115 6 C -0.189 4.189 7 C -0.221 4.221 8 C -0.200 4.200 9 N -0.400 5.400 10 C 0.349 3.651 11 O -0.503 6.503 12 C -0.615 4.615 13 H 0.098 0.902 14 C -0.184 4.184 15 N -0.451 5.451 16 Si 0.810 3.190 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.174 1.174 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.223 0.777 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.773 -3.999 -1.515 12.526 hybrid contribution -0.524 0.653 0.788 1.150 sum 11.250 -3.346 -0.727 11.759 Atomic orbital electron populations 1.21637 0.97354 0.99134 1.00892 1.21904 0.94901 0.96769 1.02446 1.20697 0.94595 0.92280 0.87619 0.94554 1.21348 0.92398 0.94325 1.03423 1.22254 0.95602 0.98263 1.02745 1.23096 1.04711 1.02699 0.91592 1.23014 0.92605 1.03834 1.00546 1.45855 1.17290 1.61547 1.15315 1.18337 0.80279 0.77906 0.88573 1.90568 1.52846 1.64270 1.42595 1.21443 1.01685 1.38769 0.99638 0.90197 1.26845 0.95641 0.94858 1.01010 1.70183 1.06666 1.35370 1.32904 0.85135 0.77756 0.78722 0.77384 1.18871 1.19921 1.17445 0.92898 0.95255 0.95384 0.89738 0.91295 0.89947 0.89147 0.90623 0.87602 0.89636 0.88729 0.87055 0.77734 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -4.16 5.61 30.59 0.17 -3.99 16 3 C 0.15 5.79 2.24 44.99 0.10 5.89 16 4 H 0.04 1.66 7.58 -2.39 -0.02 1.64 16 5 C -0.08 -2.09 5.04 30.60 0.15 -1.94 16 6 C -0.17 -4.85 5.61 -10.79 -0.06 -4.91 16 7 C -0.18 -4.41 10.18 30.59 0.31 -4.10 16 8 C -0.16 -3.52 10.25 30.60 0.31 -3.21 16 9 N -0.75 -33.03 4.45 -446.80 -1.99 -35.02 16 10 C 0.55 31.24 6.31 86.36 0.55 31.78 16 11 O -0.62 -40.19 12.15 -4.33 -0.05 -40.25 16 12 C -0.58 -33.11 9.54 24.83 0.24 -32.87 16 13 H 0.08 4.16 7.85 -2.91 -0.02 4.13 16 14 C 0.03 1.76 5.50 85.30 0.47 2.23 16 15 N -0.82 -50.82 11.83 21.83 0.26 -50.56 16 16 Si 0.99 41.88 29.56 68.60 2.03 43.91 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 20 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 21 H 0.03 1.51 5.65 -2.39 -0.01 1.50 16 22 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 23 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.03 7.87 -2.39 -0.02 2.01 16 27 H 0.08 2.72 7.69 -2.39 -0.02 2.70 16 28 H 0.11 2.20 8.03 -2.39 -0.02 2.18 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.39 15.24 8.58 -92.71 -0.80 14.44 16 33 H 0.27 15.30 8.29 -92.71 -0.77 14.54 16 Total: -1.00 -72.60 274.48 3.39 -69.21 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.29 Total: 28.92 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 2.86 Total: -16.21 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.73 Total: -85.58 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.05 Total: -40.25 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.60 3.39 -69.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.243 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds