Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46848 * 2 1 4 4 N 1.46496 * 109.47510 * 120.00018 * 2 1 3 5 5 C 1.37097 * 119.99814 * 116.47918 * 4 2 1 6 6 H 1.08004 * 120.00044 * 144.58832 * 5 4 2 7 7 C 1.38955 * 120.00178 * 324.85387 * 5 4 2 8 8 N 1.31411 * 119.99741 * 340.60458 * 7 5 4 9 9 Si 1.86793 * 120.00108 * 160.59999 * 7 5 4 10 10 H 1.48499 * 109.47105 * 90.00224 * 9 7 5 11 11 H 1.48496 * 109.47095 * 210.00001 * 9 7 5 12 12 H 1.48503 * 109.47304 * 330.00334 * 9 7 5 13 13 C 1.34779 * 119.99875 * 296.47814 * 4 2 1 14 14 O 1.21294 * 120.00264 * 5.19142 * 13 4 2 15 15 C 1.50704 * 119.99673 * 185.18847 * 13 4 2 16 16 C 1.53781 * 113.61322 * 254.89112 * 15 13 4 17 17 C 1.53955 * 87.02137 * 220.05126 * 16 15 13 18 18 C 1.53780 * 113.61070 * 157.28475 * 15 13 4 19 19 H 1.08999 * 109.46754 * 301.37994 * 1 2 3 20 20 H 1.08995 * 109.47251 * 61.38371 * 1 2 3 21 21 H 1.08999 * 109.46818 * 181.38354 * 1 2 3 22 22 H 1.09002 * 109.47295 * 240.00708 * 2 1 3 23 23 H 1.09002 * 109.46838 * 179.30587 * 3 2 1 24 24 H 1.09002 * 109.47431 * 299.30479 * 3 2 1 25 25 H 1.08995 * 109.47165 * 59.30463 * 3 2 1 26 26 H 0.97001 * 119.99866 * 180.02562 * 8 7 5 27 27 H 1.09000 * 112.85123 * 26.08682 * 15 13 4 28 28 H 1.09001 * 113.61755 * 334.56853 * 16 15 13 29 29 H 1.09001 * 113.61374 * 105.46929 * 16 15 13 30 30 H 1.09000 * 113.53833 * 270.81549 * 17 16 15 31 31 H 1.08998 * 113.66831 * 139.93148 * 17 16 15 32 32 H 1.08993 * 113.61563 * 254.52586 * 18 15 13 33 33 H 1.08998 * 113.61473 * 25.35209 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7461 -1.8458 1.0715 6 1 3.5499 -2.0548 1.7619 7 6 2.4529 -2.7452 0.0537 8 7 1.2820 -2.7052 -0.5414 9 14 3.7233 -4.0111 -0.4687 10 1 3.5501 -5.2473 0.3356 11 1 3.5434 -4.3280 -1.9082 12 1 5.0864 -3.4644 -0.2487 13 6 1.7525 -0.1902 2.4190 14 8 1.0307 0.7778 2.5344 15 6 2.3519 -0.8334 3.6430 16 6 1.3469 -1.6669 4.4555 17 6 2.0144 -1.0929 5.7185 18 6 2.4350 0.1086 4.8556 19 1 -0.3633 0.5351 0.8774 20 1 -0.3633 0.4922 -0.9021 21 1 -0.3633 -1.0274 0.0248 22 1 1.8934 -0.5137 -0.8901 23 1 3.1299 1.4426 0.0125 24 1 1.6869 1.9528 -0.8962 25 1 1.6665 1.9599 0.8836 26 1 1.0772 -3.3333 -1.2517 27 1 3.2842 -1.3573 3.4323 28 1 0.3119 -1.3504 4.3265 29 1 1.4789 -2.7429 4.3413 30 1 2.8542 -1.6888 6.0761 31 1 1.3086 -0.8372 6.5087 32 1 3.4440 0.4640 5.0641 33 1 1.6989 0.9122 4.8355 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070714907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = -20.096148 kcal Electronic energy + Delta-G solvation = -14928.715933 eV Core-core repulsion = 12569.124389 eV Total energy + Delta-G solvation = -2359.591544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.30583 -37.02538 -34.68855 -32.18082 -30.71095 -25.99709 -25.82456 -24.99461 -24.56448 -21.18490 -18.99465 -18.65868 -17.07089 -15.63138 -14.73196 -14.49888 -14.20581 -13.81964 -13.42700 -12.66711 -12.28976 -12.00922 -11.83776 -11.71477 -11.34487 -11.12041 -11.10210 -10.85095 -10.52645 -10.46929 -10.28129 -10.05857 -9.82335 -9.68962 -9.63345 -8.87640 -8.04988 -7.44410 -6.33219 -3.96443 3.12855 3.22747 3.26036 3.95145 4.14783 4.82649 5.01565 5.26078 5.27320 5.49964 5.71480 6.05914 6.15110 6.28054 6.31466 6.33543 6.39596 6.44358 6.55967 6.59357 6.75563 6.80545 6.94687 6.99206 7.06439 7.10647 7.43897 7.51123 7.69254 8.03130 8.48120 9.15200 9.65732 10.06065 10.71539 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.013906 C = 0.010298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.192862 B = 2013.032501 C = 2718.319437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 C -0.169 4.169 4 N -0.436 5.436 5 C -0.341 4.341 6 H 0.089 0.911 7 C 0.044 3.956 8 N -0.857 5.857 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.481 3.519 14 O -0.602 6.602 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.143 4.143 18 C -0.124 4.124 19 H 0.056 0.944 20 H 0.030 0.970 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.267 0.733 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 0.877 4.301 4.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.059 3.941 3 C -0.227 4.227 4 N -0.154 5.154 5 C -0.469 4.469 6 H 0.106 0.894 7 C -0.162 4.162 8 N -0.494 5.494 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.270 3.730 14 O -0.489 6.489 15 C -0.137 4.137 16 C -0.151 4.151 17 C -0.180 4.180 18 C -0.161 4.161 19 H 0.075 0.925 20 H 0.050 0.950 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.897 1.241 4.135 4.716 hybrid contribution 0.702 -0.900 -0.562 1.272 sum 2.599 0.341 3.573 4.432 Atomic orbital electron populations 1.22018 0.96375 1.02888 0.99587 1.20591 0.93892 0.90009 0.89634 1.22254 1.00021 0.98602 1.01780 1.43600 1.47056 1.21687 1.03065 1.19387 1.13489 0.96883 1.17128 0.89378 1.25317 0.95663 0.97351 0.97868 1.70002 1.18771 1.36476 1.24108 0.86218 0.81321 0.80735 0.78080 1.20350 1.20844 1.19480 1.20174 0.82773 0.85454 0.84563 1.90432 1.41056 1.30883 1.86516 1.22460 1.00356 0.98022 0.92908 1.22654 0.98660 0.99243 0.94501 1.22859 1.00220 0.98274 0.96677 1.22817 1.01261 0.96997 0.95063 0.92543 0.95047 0.90766 0.89784 0.93978 0.93689 0.91010 0.92272 0.88113 0.90312 0.91465 0.90706 0.92014 0.92357 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.99 37.16 0.33 -3.26 16 2 C 0.16 3.96 2.29 -67.93 -0.16 3.80 16 3 C -0.17 -3.65 9.06 37.16 0.34 -3.32 16 4 N -0.44 -11.07 2.49 -107.72 -0.27 -11.33 16 5 C -0.34 -8.68 8.75 -14.93 -0.13 -8.81 16 6 H 0.09 2.15 6.29 -52.48 -0.33 1.82 16 7 C 0.04 1.11 4.77 -17.47 -0.08 1.03 16 8 N -0.86 -22.51 10.52 55.50 0.58 -21.93 16 9 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.48 11.75 6.47 -10.98 -0.07 11.68 16 14 O -0.60 -15.60 12.28 5.54 0.07 -15.53 16 15 C -0.12 -2.38 3.46 -90.96 -0.31 -2.69 16 16 C -0.11 -2.07 7.64 -25.83 -0.20 -2.27 16 17 C -0.14 -2.17 8.09 -25.82 -0.21 -2.38 16 18 C -0.12 -2.16 7.53 -25.92 -0.20 -2.35 16 19 H 0.06 1.40 6.29 -51.93 -0.33 1.07 16 20 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 22 H 0.08 2.16 6.45 -51.93 -0.33 1.83 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.65 6.12 -51.93 -0.32 1.33 16 26 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.10 2.03 6.35 -51.93 -0.33 1.70 16 28 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.69 7.37 -51.93 -0.38 1.31 16 LS Contribution 262.42 15.07 3.95 3.95 Total: -1.00 -27.72 262.42 -6.27 -34.00 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.90 Total: 4.98 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.69 Total: -8.56 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.32 Total: -33.26 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.07 Total: -15.53 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.72 -6.27 -34.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.902 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds