Wall clock time and date at job start Mon Mar 30 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47278 * 2 1 4 4 C 1.52996 * 109.47177 * 176.07058 * 3 2 1 5 5 H 1.09003 * 110.21780 * 55.94205 * 4 3 2 6 6 C 1.54481 * 110.24616 * 294.01268 * 4 3 2 7 7 C 1.54631 * 101.76381 * 266.32793 * 6 4 3 8 8 C 1.51276 * 104.31104 * 335.13547 * 7 6 4 9 9 O 1.21290 * 124.93655 * 196.29030 * 8 7 6 10 10 N 1.34735 * 109.94069 * 16.31462 * 8 7 6 11 11 C 1.46503 * 124.30366 * 180.38903 * 10 8 7 12 12 C 1.50700 * 109.47027 * 275.47448 * 11 10 8 13 13 H 1.07998 * 120.00086 * 4.96262 * 12 11 10 14 14 C 1.37870 * 119.99922 * 184.96462 * 12 11 10 15 15 N 1.31511 * 120.00097 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00301 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46929 * 89.99567 * 16 14 12 18 18 H 1.48497 * 109.47365 * 210.00412 * 16 14 12 19 19 H 1.48502 * 109.46646 * 330.00316 * 16 14 12 20 20 H 1.08996 * 109.47319 * 59.99539 * 1 2 3 21 21 H 1.08997 * 109.47648 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46838 * 300.00110 * 1 2 3 23 23 H 1.08998 * 109.46838 * 239.99890 * 2 1 3 24 24 H 1.08995 * 109.46845 * 120.00220 * 2 1 3 25 25 H 1.08996 * 109.47219 * 56.06652 * 3 2 1 26 26 H 1.09001 * 109.47124 * 296.06978 * 3 2 1 27 27 H 1.08996 * 110.96994 * 148.20893 * 6 4 3 28 28 H 1.09004 * 110.96595 * 24.44936 * 6 4 3 29 29 H 1.09000 * 110.48233 * 93.87858 * 7 6 4 30 30 H 1.09002 * 110.48487 * 216.38558 * 7 6 4 31 31 H 1.09000 * 109.46847 * 35.47062 * 11 10 8 32 32 H 1.08997 * 109.47245 * 155.46938 * 11 10 8 33 33 H 0.97003 * 120.00215 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4436 0.0988 5 1 3.9970 0.8518 -0.7092 6 6 4.0143 0.8846 1.4677 7 6 4.1597 2.1772 2.3038 8 6 4.4169 3.2590 1.2782 9 8 4.8607 4.3601 1.5265 10 7 4.0797 2.8179 0.0506 11 6 4.2094 3.6091 -1.1756 12 6 2.9915 4.4809 -1.3421 13 1 2.2378 4.5089 -0.5691 14 6 2.8395 5.2426 -2.4812 15 7 3.7571 5.2080 -3.4226 16 14 1.3295 6.3227 -2.6880 17 1 1.6028 7.6688 -2.1238 18 1 1.0041 6.4475 -4.1315 19 1 0.1811 5.7101 -1.9729 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6203 1.9763 0.8526 26 1 1.7354 1.9356 -0.9231 27 1 4.9687 0.3649 1.3837 28 1 3.2515 0.2304 1.8901 29 1 3.2403 2.3821 2.8522 30 1 5.0021 2.0944 2.9906 31 1 5.0988 4.2359 -1.1110 32 1 4.2976 2.9405 -2.0318 33 1 3.6499 5.7436 -4.2243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075570211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:19 Heat of formation + Delta-G solvation = -56.868111 kcal Electronic energy + Delta-G solvation = -14453.174575 eV Core-core repulsion = 12091.988479 eV Total energy + Delta-G solvation = -2361.186096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72433 -36.31325 -33.93901 -33.18381 -31.30622 -28.47883 -26.88518 -24.63437 -22.93381 -21.86860 -19.98987 -18.42042 -16.57568 -15.80253 -15.63545 -14.87092 -14.42029 -14.30041 -13.54022 -13.01283 -12.89599 -12.47290 -12.37340 -12.02835 -11.90364 -11.41164 -11.26908 -11.00064 -10.86603 -10.74165 -10.59316 -10.48105 -10.18389 -9.99490 -9.58225 -8.85725 -8.44212 -7.63037 -6.05604 -4.09954 3.30826 3.36634 3.38488 3.47642 4.07534 4.45063 4.83728 4.90245 5.03880 5.25463 5.29013 5.31547 5.41369 5.55949 5.78680 5.85564 5.96856 5.98289 6.04210 6.12952 6.20648 6.21517 6.40859 6.57755 6.82975 7.03773 7.36540 7.62710 7.92362 8.20711 8.31541 8.89593 9.16300 9.55862 11.02280 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.011404 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.576379 B = 2454.710055 C = 3192.349254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.135 3.865 5 H 0.078 0.922 6 C -0.131 4.131 7 C -0.157 4.157 8 C 0.507 3.493 9 O -0.543 6.543 10 N -0.596 5.596 11 C 0.255 3.745 12 C -0.523 4.523 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -12.071 6.860 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.030 3.970 5 H 0.096 0.904 6 C -0.169 4.169 7 C -0.197 4.197 8 C 0.293 3.707 9 O -0.422 6.422 10 N -0.328 5.328 11 C 0.137 3.863 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.244 -11.362 6.701 13.584 hybrid contribution -0.895 0.653 -0.287 1.144 sum -4.139 -10.709 6.414 13.151 Atomic orbital electron populations 1.21755 0.96166 1.00915 1.02018 1.21552 0.95680 0.97144 1.01615 1.21976 0.94661 0.96050 1.03959 1.21513 0.94287 0.84036 0.97174 0.90412 1.22702 1.02113 0.96802 0.95264 1.22338 1.03778 0.95165 0.98451 1.20701 0.77875 0.87696 0.84391 1.90659 1.46675 1.22413 1.82429 1.48782 1.61002 1.14151 1.08857 1.19190 0.97590 0.90135 0.79392 1.21450 1.06007 1.25240 1.03482 0.92321 1.24936 0.96759 0.96802 0.95647 1.69928 1.34139 1.40991 1.08473 0.86505 0.82887 0.81024 0.77083 1.20540 1.21148 1.19884 0.92581 0.93250 0.92964 0.92080 0.92174 0.92126 0.89844 0.90646 0.89658 0.88842 0.89227 0.94746 0.94442 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.45 5.81 -26.73 -0.16 -1.60 16 3 C -0.13 -2.00 5.03 -26.73 -0.13 -2.14 16 4 C 0.13 2.21 3.14 -67.01 -0.21 2.00 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.13 -1.66 6.53 -25.10 -0.16 -1.83 16 7 C -0.16 -2.38 6.85 -26.74 -0.18 -2.56 16 8 C 0.51 11.10 8.03 -10.72 -0.09 11.01 16 9 O -0.54 -14.42 17.69 5.55 0.10 -14.32 16 10 N -0.60 -13.00 2.57 -166.15 -0.43 -13.43 16 11 C 0.26 6.75 5.65 -5.19 -0.03 6.72 16 12 C -0.52 -14.88 9.25 -34.44 -0.32 -15.20 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.87 6.18 -51.93 -0.32 0.55 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 1.02 8.06 -51.93 -0.42 0.60 16 32 H 0.04 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 276.17 15.07 4.16 4.16 Total: -1.00 -32.48 276.17 -6.72 -39.20 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.26 Total: -3.45 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.01 Total: -3.31 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.31 Total: -39.25 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.10 Total: -14.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.48 -6.72 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075570211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.669 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds