Wall clock time and date at job start Mon Mar 30 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47278 * 2 1 4 4 C 1.52996 * 109.47177 * 176.07058 * 3 2 1 5 5 H 1.09003 * 110.21780 * 55.94205 * 4 3 2 6 6 C 1.54481 * 110.24616 * 294.01268 * 4 3 2 7 7 C 1.54631 * 101.76381 * 266.32793 * 6 4 3 8 8 C 1.51276 * 104.31104 * 335.13547 * 7 6 4 9 9 O 1.21290 * 124.93655 * 196.29030 * 8 7 6 10 10 N 1.34735 * 109.94069 * 16.31462 * 8 7 6 11 11 C 1.46503 * 124.30366 * 180.38903 * 10 8 7 12 12 C 1.50700 * 109.47027 * 275.47448 * 11 10 8 13 13 H 1.07998 * 120.00086 * 4.96262 * 12 11 10 14 14 C 1.37870 * 119.99922 * 184.96462 * 12 11 10 15 15 N 1.31511 * 120.00097 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00301 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46929 * 89.99567 * 16 14 12 18 18 H 1.48497 * 109.47365 * 210.00412 * 16 14 12 19 19 H 1.48502 * 109.46646 * 330.00316 * 16 14 12 20 20 H 1.08996 * 109.47319 * 59.99539 * 1 2 3 21 21 H 1.08997 * 109.47648 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46838 * 300.00110 * 1 2 3 23 23 H 1.08998 * 109.46838 * 239.99890 * 2 1 3 24 24 H 1.08995 * 109.46845 * 120.00220 * 2 1 3 25 25 H 1.08996 * 109.47219 * 56.06652 * 3 2 1 26 26 H 1.09001 * 109.47124 * 296.06978 * 3 2 1 27 27 H 1.08996 * 110.96994 * 148.20893 * 6 4 3 28 28 H 1.09004 * 110.96595 * 24.44936 * 6 4 3 29 29 H 1.09000 * 110.48233 * 93.87858 * 7 6 4 30 30 H 1.09002 * 110.48487 * 216.38558 * 7 6 4 31 31 H 1.09000 * 109.46847 * 35.47062 * 11 10 8 32 32 H 1.08997 * 109.47245 * 155.46938 * 11 10 8 33 33 H 0.97003 * 120.00215 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4436 0.0988 5 1 3.9970 0.8518 -0.7092 6 6 4.0143 0.8846 1.4677 7 6 4.1597 2.1772 2.3038 8 6 4.4169 3.2590 1.2782 9 8 4.8607 4.3601 1.5265 10 7 4.0797 2.8179 0.0506 11 6 4.2094 3.6091 -1.1756 12 6 2.9915 4.4809 -1.3421 13 1 2.2378 4.5089 -0.5691 14 6 2.8395 5.2426 -2.4812 15 7 3.7571 5.2080 -3.4226 16 14 1.3295 6.3227 -2.6880 17 1 1.6028 7.6688 -2.1238 18 1 1.0041 6.4475 -4.1315 19 1 0.1811 5.7101 -1.9729 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6203 1.9763 0.8526 26 1 1.7354 1.9356 -0.9231 27 1 4.9687 0.3649 1.3837 28 1 3.2515 0.2304 1.8901 29 1 3.2403 2.3821 2.8522 30 1 5.0021 2.0944 2.9906 31 1 5.0988 4.2359 -1.1110 32 1 4.2976 2.9405 -2.0318 33 1 3.6499 5.7436 -4.2243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075570211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:19 Heat of formation + Delta-G solvation = -77.934334 kcal Electronic energy + Delta-G solvation = -14454.088075 eV Core-core repulsion = 12091.988479 eV Total energy + Delta-G solvation = -2362.099595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.28549 -37.92649 -35.62259 -34.82466 -33.02763 -29.70217 -28.89362 -25.89521 -24.90925 -23.02984 -21.23238 -20.10738 -18.70855 -17.51512 -17.02312 -16.39512 -16.34858 -15.67949 -14.73990 -14.57731 -14.51740 -14.07430 -13.80106 -13.47138 -13.35056 -13.09618 -12.85776 -12.68680 -12.34523 -12.26032 -11.98000 -11.79711 -11.71542 -11.50628 -11.22419 -10.72952 -10.55818 -9.45176 -8.26538 -6.40830 1.32898 1.35805 1.45575 1.77330 2.30629 2.49253 3.02433 3.53993 3.67933 3.95959 4.23675 4.25721 4.34991 4.47690 4.60895 4.76227 4.84733 4.91648 4.96762 5.01448 5.12284 5.13548 5.17885 5.25642 5.41969 5.47156 5.57640 5.62597 5.89737 6.02068 6.59291 6.67571 7.23251 7.45923 8.80451 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.011404 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.576379 B = 2454.710055 C = 3192.349254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.122 3.878 5 H 0.084 0.916 6 C -0.110 4.110 7 C -0.141 4.141 8 C 0.485 3.515 9 O -0.606 6.606 10 N -0.606 5.606 11 C 0.269 3.731 12 C -0.538 4.538 13 H 0.049 0.951 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.965 3.035 17 H -0.280 1.280 18 H -0.272 1.272 19 H -0.264 1.264 20 H 0.037 0.963 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.114 0.886 31 H -0.011 1.011 32 H 0.028 0.972 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -14.279 8.239 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.160 4.160 4 C 0.019 3.981 5 H 0.102 0.898 6 C -0.148 4.148 7 C -0.181 4.181 8 C 0.275 3.725 9 O -0.489 6.489 10 N -0.336 5.336 11 C 0.148 3.852 12 C -0.576 4.576 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.789 3.211 17 H -0.205 1.205 18 H -0.196 1.196 19 H -0.189 1.189 20 H 0.056 0.944 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.638 -13.631 8.086 16.514 hybrid contribution -0.429 1.335 -0.747 1.588 sum -5.068 -12.297 7.340 15.191 Atomic orbital electron populations 1.21769 0.95773 1.02153 1.01279 1.21517 0.95963 0.94236 1.03346 1.21884 0.94181 0.98520 1.01409 1.21941 0.94695 0.81149 1.00292 0.89807 1.22773 1.04551 0.95898 0.91538 1.22342 1.05619 0.93224 0.96919 1.22039 0.76425 0.88402 0.85674 1.90606 1.49225 1.25507 1.83515 1.48866 1.61033 1.16123 1.07603 1.18641 0.95147 0.89883 0.81487 1.21624 1.06321 1.26137 1.03544 0.93290 1.25827 0.99918 0.98010 0.95234 1.70033 1.35910 1.41747 1.08968 0.85456 0.79206 0.78681 0.77758 1.20545 1.19642 1.18853 0.94386 0.90983 0.92760 0.91687 0.88988 0.92712 0.94215 0.88360 0.85618 0.86917 0.86746 0.99263 0.95427 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -2.31 5.81 30.59 0.18 -2.13 16 3 C -0.12 -3.65 5.03 30.59 0.15 -3.50 16 4 C 0.12 3.81 3.14 45.44 0.14 3.96 16 5 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 6 C -0.11 -2.30 6.53 31.65 0.21 -2.09 16 7 C -0.14 -3.84 6.85 30.59 0.21 -3.63 16 8 C 0.49 21.43 8.03 87.85 0.71 22.14 16 9 O -0.61 -33.46 17.69 -3.06 -0.05 -33.52 16 10 N -0.61 -27.00 2.57 -797.99 -2.05 -29.05 16 11 C 0.27 15.04 5.65 85.63 0.48 15.52 16 12 C -0.54 -31.86 9.25 25.60 0.24 -31.63 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 14 C 0.01 0.54 5.46 84.65 0.46 1.00 16 15 N -0.93 -56.51 13.29 21.44 0.28 -56.23 16 16 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.34 6.34 -2.39 -0.02 1.32 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.52 8.01 -2.39 -0.02 1.51 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.13 1.71 6.18 -2.39 -0.01 1.69 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H -0.01 -0.68 8.06 -2.39 -0.02 -0.70 16 32 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.62 276.17 4.76 -70.86 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.06 Total: 2.80 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 3.49 Total: -2.68 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.77 Total: -85.28 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.52 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.62 4.76 -70.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075570211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.077 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds