Wall clock time and date at job start Mon Mar 30 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08999 * 109.46932 * 303.05036 * 3 2 1 5 5 C 1.50701 * 109.47118 * 183.05191 * 3 2 1 6 6 H 1.08004 * 119.99938 * 245.41217 * 5 3 2 7 7 C 1.37875 * 120.00059 * 65.41386 * 5 3 2 8 8 N 1.31511 * 120.00360 * 9.57236 * 7 5 3 9 9 Si 1.86804 * 120.00076 * 189.57363 * 7 5 3 10 10 H 1.48494 * 109.47149 * 84.99019 * 9 7 5 11 11 H 1.48497 * 109.47083 * 204.99092 * 9 7 5 12 12 H 1.48501 * 109.46875 * 324.99208 * 9 7 5 13 13 N 1.46497 * 109.47477 * 63.04988 * 3 2 1 14 14 C 1.45748 * 117.94960 * 240.00293 * 13 3 2 15 15 C 1.52919 * 110.49381 * 160.92419 * 14 13 3 16 16 C 1.53349 * 108.66958 * 50.74812 * 15 14 13 17 17 C 1.53050 * 108.44129 * 292.48604 * 16 15 14 18 18 C 1.33356 * 117.94585 * 60.02107 * 13 3 2 19 19 O 1.21279 * 118.24513 * 2.24608 * 18 13 3 20 20 H 1.09007 * 109.47174 * 300.00038 * 1 2 3 21 21 H 1.08992 * 109.47170 * 60.00191 * 1 2 3 22 22 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47120 * 239.99689 * 2 1 3 24 24 H 1.09006 * 109.47205 * 119.99581 * 2 1 3 25 25 H 0.96998 * 120.00356 * 180.02562 * 8 7 5 26 26 H 1.09003 * 109.30302 * 40.61105 * 14 13 3 27 27 H 1.09003 * 109.29750 * 281.23568 * 14 13 3 28 28 H 1.08990 * 109.60623 * 170.50791 * 15 14 13 29 29 H 1.08999 * 109.60047 * 291.00074 * 15 14 13 30 30 H 1.08997 * 109.67341 * 52.21457 * 16 15 14 31 31 H 1.09003 * 109.66947 * 172.73471 * 16 15 14 32 32 H 1.09005 * 109.40445 * 288.76044 * 17 16 15 33 33 H 1.08994 * 109.33305 * 168.97572 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6326 1.9719 -0.8614 5 6 3.5451 1.4432 -0.0756 6 1 4.1273 1.8175 0.7535 7 6 4.1789 0.9661 -1.2033 8 7 3.4802 0.6871 -2.2820 9 14 6.0301 0.7159 -1.1990 10 1 6.3479 -0.6180 -0.6291 11 1 6.5435 0.7949 -2.5901 12 1 6.6703 1.7718 -0.3742 13 7 1.6126 2.1117 1.2312 14 6 0.7702 3.2947 1.1086 15 6 0.0470 3.5758 2.4263 16 6 1.0781 3.5786 3.5614 17 6 1.6166 2.1558 3.7297 18 6 2.0190 1.6003 2.3938 19 8 2.7533 0.6353 2.3710 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 3.9261 0.3511 -3.0752 26 1 0.0341 3.1329 0.3211 27 1 1.3898 4.1527 0.8476 28 1 -0.4426 4.5482 2.3746 29 1 -0.6956 2.7990 2.6088 30 1 1.8968 4.2534 3.3117 31 1 0.6036 3.9035 4.4873 32 1 0.8422 1.5247 4.1658 33 1 2.4834 2.1739 4.3903 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087031685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:25 Heat of formation + Delta-G solvation = -47.017255 kcal Electronic energy + Delta-G solvation = -14996.118426 eV Core-core repulsion = 12635.359496 eV Total energy + Delta-G solvation = -2360.758930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.65603 -35.61707 -34.84546 -32.08062 -30.86912 -29.02680 -26.85924 -23.92785 -23.01104 -21.94587 -19.99013 -17.81084 -16.40244 -15.94369 -14.99824 -14.68928 -14.32049 -13.79586 -13.66648 -13.21016 -12.69768 -12.57327 -12.29459 -11.51902 -11.30415 -11.25136 -10.97297 -10.77776 -10.73751 -10.64856 -10.48038 -10.07473 -9.88036 -9.65428 -9.13631 -8.48084 -8.09405 -7.42633 -5.94372 -3.91636 3.40447 3.45743 3.50000 3.69180 4.11399 4.56624 5.02177 5.04779 5.08633 5.32839 5.38926 5.74475 5.77118 5.93894 6.04527 6.10811 6.17843 6.19528 6.25400 6.28992 6.45360 6.49848 6.92942 7.10862 7.31440 7.33951 7.82784 7.89666 8.11346 8.33600 8.77583 9.07312 9.34322 9.70520 11.13777 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.011529 C = 0.010353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.823451 B = 2427.995525 C = 2703.859972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.589 5.589 14 C 0.116 3.884 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.137 4.137 18 C 0.504 3.496 19 O -0.536 6.536 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.260 0.740 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 5.608 7.753 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.202 1.202 13 N -0.321 5.321 14 C -0.008 4.008 15 C -0.172 4.172 16 C -0.158 4.158 17 C -0.178 4.178 18 C 0.290 3.710 19 O -0.414 6.414 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.148 5.052 7.552 11.560 hybrid contribution 0.912 -0.098 -0.091 0.921 sum -6.237 4.954 7.461 10.913 Atomic orbital electron populations 1.21796 0.99376 0.99163 0.99680 1.21900 0.91559 1.00421 1.03136 1.18860 0.94726 0.89116 0.80159 0.93538 1.21240 0.90802 1.40524 1.00851 0.92388 1.24844 0.98180 0.95899 0.95110 1.69942 1.35631 1.45848 1.02290 0.86579 0.85803 0.78848 0.76547 1.20603 1.21580 1.20210 1.47634 1.49003 1.27570 1.07941 1.21241 0.93645 0.89024 0.96901 1.21874 0.98126 1.02084 0.95142 1.21607 0.98972 0.96673 0.98534 1.21696 1.02546 0.96866 0.96665 1.19691 0.81343 0.84647 0.85294 1.90686 1.35766 1.27577 1.87339 0.94615 0.94016 0.94850 0.90388 0.91732 0.93050 0.91498 0.92506 0.90719 0.91485 0.91347 0.91596 0.89609 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.78 37.16 0.36 -2.54 16 2 C -0.13 -3.28 5.10 -26.73 -0.14 -3.42 16 3 C 0.27 6.91 1.87 -69.08 -0.13 6.78 16 4 H 0.05 1.25 7.73 -51.93 -0.40 0.85 16 5 C -0.50 -14.28 7.40 -34.44 -0.25 -14.53 16 6 H 0.06 1.76 7.13 -52.48 -0.37 1.38 16 7 C 0.06 1.74 5.18 -17.82 -0.09 1.64 16 8 N -0.90 -26.20 12.16 55.43 0.67 -25.52 16 9 Si 0.89 22.73 29.55 -169.99 -5.02 17.71 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 N -0.59 -12.48 2.15 -168.70 -0.36 -12.84 16 14 C 0.12 1.89 6.25 -4.49 -0.03 1.86 16 15 C -0.13 -1.66 6.02 -26.59 -0.16 -1.82 16 16 C -0.12 -1.49 6.03 -26.52 -0.16 -1.65 16 17 C -0.14 -2.13 6.03 -28.11 -0.17 -2.30 16 18 C 0.50 10.78 6.71 -11.87 -0.08 10.71 16 19 O -0.54 -13.98 13.27 5.56 0.07 -13.91 16 20 H 0.03 0.67 7.69 -51.93 -0.40 0.28 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 2.14 6.84 -51.93 -0.36 1.79 16 24 H 0.06 1.73 5.94 -51.93 -0.31 1.42 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -31.92 263.75 -6.70 -38.62 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.19 Total: -2.77 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.85 Total: -5.27 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.31 Total: -38.36 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.92 -6.70 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087031685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.396 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds