Wall clock time and date at job start Mon Mar 30 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08999 * 109.46932 * 303.05036 * 3 2 1 5 5 C 1.50701 * 109.47118 * 183.05191 * 3 2 1 6 6 H 1.08004 * 119.99938 * 245.41217 * 5 3 2 7 7 C 1.37875 * 120.00059 * 65.41386 * 5 3 2 8 8 N 1.31511 * 120.00360 * 9.57236 * 7 5 3 9 9 Si 1.86804 * 120.00076 * 189.57363 * 7 5 3 10 10 H 1.48494 * 109.47149 * 84.99019 * 9 7 5 11 11 H 1.48497 * 109.47083 * 204.99092 * 9 7 5 12 12 H 1.48501 * 109.46875 * 324.99208 * 9 7 5 13 13 N 1.46497 * 109.47477 * 63.04988 * 3 2 1 14 14 C 1.45748 * 117.94960 * 240.00293 * 13 3 2 15 15 C 1.52919 * 110.49381 * 160.92419 * 14 13 3 16 16 C 1.53349 * 108.66958 * 50.74812 * 15 14 13 17 17 C 1.53050 * 108.44129 * 292.48604 * 16 15 14 18 18 C 1.33356 * 117.94585 * 60.02107 * 13 3 2 19 19 O 1.21279 * 118.24513 * 2.24608 * 18 13 3 20 20 H 1.09007 * 109.47174 * 300.00038 * 1 2 3 21 21 H 1.08992 * 109.47170 * 60.00191 * 1 2 3 22 22 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47120 * 239.99689 * 2 1 3 24 24 H 1.09006 * 109.47205 * 119.99581 * 2 1 3 25 25 H 0.96998 * 120.00356 * 180.02562 * 8 7 5 26 26 H 1.09003 * 109.30302 * 40.61105 * 14 13 3 27 27 H 1.09003 * 109.29750 * 281.23568 * 14 13 3 28 28 H 1.08990 * 109.60623 * 170.50791 * 15 14 13 29 29 H 1.08999 * 109.60047 * 291.00074 * 15 14 13 30 30 H 1.08997 * 109.67341 * 52.21457 * 16 15 14 31 31 H 1.09003 * 109.66947 * 172.73471 * 16 15 14 32 32 H 1.09005 * 109.40445 * 288.76044 * 17 16 15 33 33 H 1.08994 * 109.33305 * 168.97572 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6326 1.9719 -0.8614 5 6 3.5451 1.4432 -0.0756 6 1 4.1273 1.8175 0.7535 7 6 4.1789 0.9661 -1.2033 8 7 3.4802 0.6871 -2.2820 9 14 6.0301 0.7159 -1.1990 10 1 6.3479 -0.6180 -0.6291 11 1 6.5435 0.7949 -2.5901 12 1 6.6703 1.7718 -0.3742 13 7 1.6126 2.1117 1.2312 14 6 0.7702 3.2947 1.1086 15 6 0.0470 3.5758 2.4263 16 6 1.0781 3.5786 3.5614 17 6 1.6166 2.1558 3.7297 18 6 2.0190 1.6003 2.3938 19 8 2.7533 0.6353 2.3710 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 3.9261 0.3511 -3.0752 26 1 0.0341 3.1329 0.3211 27 1 1.3898 4.1527 0.8476 28 1 -0.4426 4.5482 2.3746 29 1 -0.6956 2.7990 2.6088 30 1 1.8968 4.2534 3.3117 31 1 0.6036 3.9035 4.4873 32 1 0.8422 1.5247 4.1658 33 1 2.4834 2.1739 4.3903 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087031685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:25 Heat of formation + Delta-G solvation = -67.174445 kcal Electronic energy + Delta-G solvation = -14996.992507 eV Core-core repulsion = 12635.359496 eV Total energy + Delta-G solvation = -2361.633012 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26538 -37.15787 -36.58978 -34.06428 -32.55959 -30.37515 -28.81999 -25.49077 -24.73980 -23.41937 -21.66941 -19.38132 -18.42024 -17.56282 -16.71196 -16.30185 -16.13313 -15.26378 -15.11528 -14.67906 -14.40821 -14.00557 -13.88523 -13.41639 -13.30567 -12.89639 -12.66469 -12.51777 -12.19014 -12.15792 -11.84926 -11.71280 -11.60363 -11.59559 -11.11722 -10.54538 -9.98783 -9.20145 -8.14989 -6.18814 1.32732 1.37328 1.44769 2.05670 2.38766 2.59194 3.13814 3.88709 4.00030 4.02382 4.09731 4.51641 4.52230 4.59946 4.65420 4.70312 4.81928 4.97212 5.01471 5.06928 5.15281 5.18801 5.21255 5.37468 5.44643 5.47911 5.66608 5.84588 6.07818 6.26028 6.81936 7.09659 7.41170 7.73752 8.91087 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.011529 C = 0.010353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.823451 B = 2427.995525 C = 2703.859972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.029 0.971 5 C -0.511 4.511 6 H 0.033 0.967 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.946 3.054 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.275 1.275 13 N -0.591 5.591 14 C 0.104 3.896 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.128 4.128 18 C 0.490 3.510 19 O -0.596 6.596 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 6.922 9.053 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.173 3.827 4 H 0.047 0.953 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.773 3.227 10 H -0.211 1.211 11 H -0.199 1.199 12 H -0.200 1.200 13 N -0.322 5.322 14 C -0.018 4.018 15 C -0.161 4.161 16 C -0.152 4.152 17 C -0.168 4.168 18 C 0.279 3.721 19 O -0.478 6.478 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.631 6.411 8.855 13.929 hybrid contribution 1.367 -0.494 -0.503 1.538 sum -7.264 5.917 8.352 12.551 Atomic orbital electron populations 1.21636 0.95557 1.00679 1.00758 1.21693 0.94912 0.99480 1.00201 1.18511 0.92857 0.89613 0.81692 0.95300 1.21427 0.92840 1.40722 1.00033 0.94821 1.25502 1.01973 0.95793 0.94960 1.70011 1.36930 1.46176 1.02558 0.85758 0.81520 0.78258 0.77178 1.21116 1.19915 1.20031 1.47643 1.49360 1.28582 1.06638 1.21585 0.93380 0.86792 1.00080 1.21875 0.97714 1.04317 0.92186 1.21636 0.98959 0.94086 1.00480 1.21687 1.03508 0.99149 0.92465 1.20845 0.80222 0.83868 0.87175 1.90653 1.38449 1.30304 1.88392 0.92996 0.93306 0.93161 0.93733 0.94135 0.92833 0.90982 0.92740 0.87062 0.90644 0.92054 0.87537 0.87370 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.78 71.98 0.70 -4.42 16 2 C -0.12 -6.35 5.10 30.59 0.16 -6.19 16 3 C 0.28 14.39 1.87 44.25 0.08 14.47 16 4 H 0.03 1.60 7.73 -2.39 -0.02 1.58 16 5 C -0.51 -30.52 7.40 25.60 0.19 -30.33 16 6 H 0.03 2.12 7.13 -2.91 -0.02 2.10 16 7 C 0.02 0.96 5.18 84.65 0.44 1.40 16 8 N -0.92 -54.71 12.16 21.45 0.26 -54.45 16 9 Si 0.95 47.60 29.55 68.60 2.03 49.62 16 10 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 N -0.59 -24.97 2.15 -806.82 -1.73 -26.70 16 14 C 0.10 3.20 6.25 86.49 0.54 3.74 16 15 C -0.12 -2.51 6.02 30.68 0.18 -2.33 16 16 C -0.11 -2.36 6.03 30.73 0.19 -2.17 16 17 C -0.13 -3.65 6.03 29.70 0.18 -3.47 16 18 C 0.49 20.90 6.71 87.71 0.59 21.49 16 19 O -0.60 -32.07 13.27 -3.03 -0.04 -32.11 16 20 H 0.05 1.87 7.69 -2.38 -0.02 1.86 16 21 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 2.53 6.84 -2.39 -0.02 2.52 16 24 H 0.04 2.25 5.94 -2.38 -0.01 2.23 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.07 2.12 8.03 -2.39 -0.02 2.10 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -72.57 263.75 4.83 -67.73 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.07 Total: 3.73 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.25 Total: -7.83 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.47 Total: -81.15 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.04 Total: -32.11 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -72.57 4.83 -67.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087031685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.559 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds