Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09003 * 110.85955 * 54.30047 * 3 2 1 5 5 C 1.54629 * 110.97004 * 290.51428 * 3 2 1 6 6 C 1.51342 * 104.16839 * 217.10793 * 5 3 2 7 7 O 1.21280 * 124.93541 * 196.24712 * 6 5 3 8 8 N 1.34426 * 110.12798 * 16.20047 * 6 5 3 9 9 C 1.46500 * 124.34882 * 180.46346 * 8 6 5 10 10 C 1.53003 * 109.46918 * 269.97241 * 9 8 6 11 11 C 1.50696 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00651 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99931 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00083 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00199 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47109 * 60.00009 * 15 13 11 17 17 H 1.48495 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47265 * 300.00136 * 15 13 11 19 19 C 1.46763 * 111.30251 * 0.43571 * 8 6 5 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09000 * 110.48825 * 335.75531 * 5 3 2 26 26 H 1.09000 * 110.48905 * 98.40287 * 5 3 2 27 27 H 1.08999 * 109.47314 * 29.97330 * 9 8 6 28 28 H 1.09002 * 109.46969 * 149.97429 * 9 8 6 29 29 H 1.08999 * 109.47201 * 300.00158 * 10 9 8 30 30 H 1.09002 * 109.47147 * 60.00298 * 10 9 8 31 31 H 0.97001 * 120.00448 * 179.97438 * 14 13 11 32 32 H 1.08995 * 110.24882 * 223.98350 * 19 8 6 33 33 H 1.08999 * 110.31635 * 102.02083 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6090 2.0065 0.8272 5 6 1.7474 2.1329 -1.3523 6 6 2.9616 3.0032 -1.5943 7 8 3.0154 3.9136 -2.3938 8 7 3.9715 2.6212 -0.7935 9 6 5.2899 3.2593 -0.7643 10 6 6.2123 2.5706 -1.7722 11 6 7.5683 3.2274 -1.7425 12 1 7.7539 4.0531 -1.0717 13 6 8.5721 2.7741 -2.5720 14 7 8.3464 1.7682 -3.3886 15 14 10.2532 3.5877 -2.5348 16 1 10.8316 3.4669 -1.1723 17 1 11.1484 2.9193 -3.5130 18 1 10.1163 5.0233 -2.8888 19 6 3.5835 1.4832 0.0481 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6456 1.3916 -2.1450 26 1 0.8473 2.7437 -1.2820 27 1 5.1895 4.3130 -1.0246 28 1 5.7142 3.1711 0.2359 29 1 6.3128 1.5169 -1.5118 30 1 5.7881 2.6589 -2.7724 31 1 9.0525 1.4495 -3.9724 32 1 3.9251 1.6372 1.0716 33 1 3.9978 0.5579 -0.3521 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087232032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -58.688593 kcal Electronic energy + Delta-G solvation = -13976.190216 eV Core-core repulsion = 11614.925178 eV Total energy + Delta-G solvation = -2361.265038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.02683 -36.45463 -34.73518 -33.00708 -31.03346 -28.55448 -27.41599 -24.78977 -23.18134 -21.35532 -20.40778 -18.78385 -16.56026 -16.31319 -15.60780 -14.92720 -14.53209 -14.37232 -13.65925 -13.26274 -13.06458 -12.93745 -12.58796 -12.26651 -12.15864 -11.56618 -11.30081 -11.05343 -10.91614 -10.81962 -10.72846 -10.65367 -9.96510 -9.83002 -9.34698 -9.08816 -8.35630 -7.97821 -6.00791 -4.04420 3.11867 3.34051 3.38134 3.40479 3.63169 4.46781 4.47901 4.57726 4.69255 5.09620 5.21702 5.27768 5.35207 5.39694 5.65799 5.73132 5.77154 5.81978 5.86448 5.96722 6.07736 6.12975 6.26005 6.49165 6.83701 7.04962 7.55654 7.69195 7.89189 7.99217 8.35497 8.73847 9.02289 9.59500 11.10695 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.054307 B = 0.006304 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.464232 B = 4440.736528 C = 4619.294916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.087 0.913 5 C -0.150 4.150 6 C 0.509 3.491 7 O -0.539 6.539 8 N -0.612 5.612 9 C 0.127 3.873 10 C 0.011 3.989 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.106 3.894 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.404 -4.305 8.675 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.120 4.120 4 H 0.105 0.895 5 C -0.190 4.190 6 C 0.296 3.704 7 O -0.416 6.416 8 N -0.345 5.345 9 C 0.007 3.993 10 C -0.027 4.027 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.018 4.018 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.192 -3.894 8.130 15.978 hybrid contribution 1.062 0.271 -0.037 1.096 sum -12.131 -3.624 8.093 15.026 Atomic orbital electron populations 1.21774 0.95612 1.01586 1.01986 1.21520 0.96006 0.94901 1.02718 1.22221 0.95120 0.97114 0.97558 0.89465 1.22449 0.98074 0.99947 0.98536 1.20794 0.85380 0.83894 0.80297 1.90700 1.83563 1.31319 1.36055 1.48542 1.13911 1.32596 1.39407 1.21799 0.79515 0.97113 1.00870 1.19406 0.93182 0.95837 0.94228 1.21059 0.95962 1.17008 1.22149 0.92525 1.25004 0.98999 0.95023 0.95229 1.69965 1.33460 1.25963 1.23852 0.86602 0.83627 0.79663 0.77777 1.20194 1.21251 1.20132 1.22099 0.93855 0.90322 0.95540 0.92762 0.92478 0.92740 0.91373 0.91305 0.88164 0.88778 0.91172 0.91705 0.96477 0.96105 0.92877 0.90771 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.79 37.16 0.36 -0.78 16 2 C -0.11 -0.99 5.28 -26.73 -0.14 -1.13 16 3 C -0.10 -1.09 3.15 -88.99 -0.28 -1.37 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.97 5.74 -26.71 -0.15 -2.12 16 6 C 0.51 9.81 8.02 -10.83 -0.09 9.72 16 7 O -0.54 -12.86 17.59 5.56 0.10 -12.76 16 8 N -0.61 -11.45 2.93 -172.39 -0.51 -11.96 16 9 C 0.13 2.78 5.87 -4.04 -0.02 2.75 16 10 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 15 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.11 1.45 6.92 -3.12 -0.02 1.43 16 20 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.06 0.44 7.62 -51.93 -0.40 0.04 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 25 H 0.10 1.24 7.81 -51.93 -0.41 0.84 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.62 7.93 -51.93 -0.41 1.20 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 LS Contribution 277.89 15.07 4.19 4.19 Total: -1.00 -33.67 277.89 -6.79 -40.46 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -5.38 Total: -5.04 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.90 Total: -5.11 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.23 Total: -38.65 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.10 Total: -12.76 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.67 -6.79 -40.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087232032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.230 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds