Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09003 * 110.85955 * 54.30047 * 3 2 1 5 5 C 1.54629 * 110.97004 * 290.51428 * 3 2 1 6 6 C 1.51342 * 104.16839 * 217.10793 * 5 3 2 7 7 O 1.21280 * 124.93541 * 196.24712 * 6 5 3 8 8 N 1.34426 * 110.12798 * 16.20047 * 6 5 3 9 9 C 1.46500 * 124.34882 * 180.46346 * 8 6 5 10 10 C 1.53003 * 109.46918 * 269.97241 * 9 8 6 11 11 C 1.50696 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00651 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99931 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00083 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00199 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47109 * 60.00009 * 15 13 11 17 17 H 1.48495 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47265 * 300.00136 * 15 13 11 19 19 C 1.46763 * 111.30251 * 0.43571 * 8 6 5 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09000 * 110.48825 * 335.75531 * 5 3 2 26 26 H 1.09000 * 110.48905 * 98.40287 * 5 3 2 27 27 H 1.08999 * 109.47314 * 29.97330 * 9 8 6 28 28 H 1.09002 * 109.46969 * 149.97429 * 9 8 6 29 29 H 1.08999 * 109.47201 * 300.00158 * 10 9 8 30 30 H 1.09002 * 109.47147 * 60.00298 * 10 9 8 31 31 H 0.97001 * 120.00448 * 179.97438 * 14 13 11 32 32 H 1.08995 * 110.24882 * 223.98350 * 19 8 6 33 33 H 1.08999 * 110.31635 * 102.02083 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6090 2.0065 0.8272 5 6 1.7474 2.1329 -1.3523 6 6 2.9616 3.0032 -1.5943 7 8 3.0154 3.9136 -2.3938 8 7 3.9715 2.6212 -0.7935 9 6 5.2899 3.2593 -0.7643 10 6 6.2123 2.5706 -1.7722 11 6 7.5683 3.2274 -1.7425 12 1 7.7539 4.0531 -1.0717 13 6 8.5721 2.7741 -2.5720 14 7 8.3464 1.7682 -3.3886 15 14 10.2532 3.5877 -2.5348 16 1 10.8316 3.4669 -1.1723 17 1 11.1484 2.9193 -3.5130 18 1 10.1163 5.0233 -2.8888 19 6 3.5835 1.4832 0.0481 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6456 1.3916 -2.1450 26 1 0.8473 2.7437 -1.2820 27 1 5.1895 4.3130 -1.0246 28 1 5.7142 3.1711 0.2359 29 1 6.3128 1.5169 -1.5118 30 1 5.7881 2.6589 -2.7724 31 1 9.0525 1.4495 -3.9724 32 1 3.9251 1.6372 1.0716 33 1 3.9978 0.5579 -0.3521 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087232032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -80.664627 kcal Electronic energy + Delta-G solvation = -13977.143168 eV Core-core repulsion = 11614.925178 eV Total energy + Delta-G solvation = -2362.217990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40335 -37.83814 -36.33491 -34.84468 -32.56314 -30.08811 -28.56643 -26.69933 -24.15251 -23.28461 -21.31733 -20.32189 -18.66726 -17.57074 -17.17946 -16.63346 -16.22218 -15.49346 -14.88193 -14.60551 -14.46603 -14.35685 -14.06061 -13.81951 -13.43762 -12.98096 -12.84731 -12.62656 -12.40738 -12.04929 -11.96820 -11.75625 -11.65288 -11.44903 -11.41045 -10.74088 -10.60704 -9.58760 -8.25178 -6.38694 1.38438 1.43020 1.50610 1.61183 2.17078 2.41452 3.08217 3.43213 3.51772 3.82785 4.17313 4.30400 4.43691 4.50967 4.56636 4.65288 4.71455 4.72467 4.86366 4.90455 4.98389 5.20737 5.27356 5.31675 5.42849 5.43893 5.56730 5.59256 5.80366 6.13187 6.31058 6.76519 7.21299 7.31504 8.87085 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.054307 B = 0.006304 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.464232 B = 4440.736528 C = 4619.294916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.082 4.082 4 H 0.110 0.890 5 C -0.137 4.137 6 C 0.491 3.509 7 O -0.598 6.598 8 N -0.618 5.618 9 C 0.140 3.860 10 C 0.023 3.977 11 C -0.548 4.548 12 H 0.067 0.933 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.259 1.259 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.096 3.904 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.000 1.000 30 H -0.029 1.029 31 H 0.265 0.735 32 H 0.098 0.902 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 -4.687 10.619 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.101 4.101 4 H 0.128 0.872 5 C -0.177 4.177 6 C 0.280 3.720 7 O -0.480 6.480 8 N -0.350 5.350 9 C 0.018 3.982 10 C -0.016 4.016 11 C -0.586 4.586 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.796 3.204 16 H -0.183 1.183 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.026 4.026 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.019 0.981 30 H -0.010 1.010 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.640 -4.311 10.118 17.522 hybrid contribution 1.176 0.348 -0.659 1.392 sum -12.464 -3.963 9.459 16.141 Atomic orbital electron populations 1.21768 0.94401 1.02298 1.02377 1.21513 0.96942 0.93180 1.03128 1.22246 0.92579 0.98649 0.96636 0.87152 1.22472 0.95609 0.99277 1.00338 1.21970 0.87273 0.83652 0.79089 1.90651 1.84892 1.34085 1.38387 1.48682 1.12583 1.33623 1.40104 1.21382 0.80647 0.95713 1.00466 1.19223 0.93929 0.95371 0.93028 1.21529 0.96910 1.17501 1.22650 0.91439 1.26052 1.03735 0.95502 0.94507 1.70113 1.35057 1.27550 1.24664 0.85387 0.77865 0.78470 0.78638 1.18309 1.20739 1.19481 1.22464 0.96318 0.88097 0.95706 0.91762 0.92720 0.91964 0.89863 0.92129 0.87305 0.86566 0.92966 0.88993 0.98118 1.01037 0.92632 0.88415 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.79 71.98 0.70 -1.04 16 2 C -0.11 -1.56 5.28 30.59 0.16 -1.39 16 3 C -0.08 -1.52 3.15 -9.74 -0.03 -1.55 16 4 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.14 -3.38 5.74 30.61 0.18 -3.20 16 6 C 0.49 19.15 8.02 87.92 0.71 19.85 16 7 O -0.60 -29.82 17.59 -3.03 -0.05 -29.88 16 8 N -0.62 -23.19 2.93 -817.89 -2.40 -25.59 16 9 C 0.14 6.21 5.87 86.38 0.51 6.72 16 10 C 0.02 1.26 5.30 29.85 0.16 1.42 16 11 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -58.67 13.29 21.45 0.28 -58.38 16 15 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.10 2.47 6.92 86.83 0.60 3.07 16 20 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 21 H 0.05 0.66 7.62 -2.39 -0.02 0.65 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 25 H 0.11 2.53 7.81 -2.39 -0.02 2.51 16 26 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 2.49 7.93 -2.39 -0.02 2.47 16 28 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 29 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 30 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 16 31 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.79 7.89 -2.39 -0.02 1.77 16 Total: -1.00 -76.21 277.89 4.60 -71.61 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.06 Total: 2.77 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.68 Total: -7.59 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.11 Total: -83.97 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -76.21 4.60 -71.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087232032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.054 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds