Wall clock time and date at job start Mon Mar 30 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47287 * 2 1 4 4 C 1.53005 * 109.46973 * 120.00502 * 2 1 3 5 5 H 1.08993 * 110.91125 * 297.54998 * 4 2 1 6 6 C 1.55162 * 111.00224 * 173.64981 * 4 2 1 7 7 C 1.54307 * 102.86078 * 206.22976 * 6 4 2 8 8 N 1.47022 * 107.28225 * 22.52243 * 7 6 4 9 9 C 1.34773 * 125.65043 * 180.96715 * 8 7 6 10 10 O 1.21693 * 119.99830 * 179.69479 * 9 8 7 11 11 C 1.46368 * 120.00188 * 359.42055 * 9 8 7 12 12 H 1.08001 * 120.00155 * 0.27756 * 11 9 8 13 13 C 1.40047 * 120.00322 * 180.27118 * 11 9 8 14 14 N 1.30674 * 119.99675 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00219 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47294 * 90.00321 * 15 13 11 17 17 H 1.48499 * 109.47218 * 210.00181 * 15 13 11 18 18 H 1.48496 * 109.47166 * 330.00013 * 15 13 11 19 19 C 1.47422 * 108.69678 * 0.70824 * 8 7 6 20 20 H 1.08998 * 109.46712 * 299.99354 * 1 2 3 21 21 H 1.09000 * 109.46992 * 59.99982 * 1 2 3 22 22 H 1.09004 * 109.46997 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46882 * 240.00094 * 2 1 3 24 24 H 1.08995 * 109.47247 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47396 * 300.00383 * 3 2 1 26 26 H 1.09008 * 109.47083 * 60.00217 * 3 2 1 27 27 H 1.09008 * 110.71686 * 324.78377 * 6 4 2 28 28 H 1.08999 * 110.71738 * 87.87763 * 6 4 2 29 29 H 1.09000 * 109.98464 * 263.04222 * 7 6 4 30 30 H 1.08999 * 109.77751 * 141.88646 * 7 6 4 31 31 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 32 32 H 1.09008 * 110.37173 * 94.93739 * 19 8 7 33 33 H 1.09008 * 110.36696 * 217.25631 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.7257 -0.2016 2.1542 6 6 3.5827 -0.8824 1.2076 7 6 3.8216 -2.1303 2.0832 8 7 2.5681 -2.8984 2.1001 9 6 2.3608 -4.0488 2.7709 10 8 1.2760 -4.5976 2.7169 11 6 3.4422 -4.6413 3.5595 12 1 4.4049 -4.1542 3.6075 13 6 3.2285 -5.8397 4.2520 14 7 2.0638 -6.4292 4.1936 15 14 4.6084 -6.5954 5.2590 16 1 4.5517 -6.0723 6.6476 17 1 4.4546 -8.0723 5.2797 18 1 5.9161 -6.2425 4.6501 19 6 1.5736 -2.1985 1.2668 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8901 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.9253 -1.0517 0.1867 28 1 4.0732 -0.0092 1.6377 29 1 4.0854 -1.8290 3.0970 30 1 4.6208 -2.7345 1.6541 31 1 1.9159 -7.2595 4.6729 32 1 1.5701 -2.6073 0.2563 33 1 0.5819 -2.2779 1.7124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166189739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:08 Heat of formation + Delta-G solvation = -81.358842 kcal Electronic energy + Delta-G solvation = -14269.277460 eV Core-core repulsion = 11907.029367 eV Total energy + Delta-G solvation = -2362.248093 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42590 -38.25280 -35.63647 -34.66708 -31.28906 -29.97463 -28.06631 -27.75308 -24.33129 -22.56529 -21.08532 -20.63484 -18.62192 -17.66878 -16.71789 -16.21660 -15.84879 -15.15349 -14.69172 -14.55813 -14.13683 -13.96981 -13.66625 -13.22202 -13.06705 -12.91369 -12.75645 -12.68217 -12.50526 -12.30309 -12.01948 -11.75901 -11.42577 -11.34308 -11.28549 -10.96490 -9.91837 -9.10723 -8.33052 -6.89406 1.37497 1.39741 1.55429 2.22000 2.41216 2.87870 3.53736 3.63160 3.81467 3.88812 4.24639 4.39909 4.43548 4.49791 4.58540 4.79137 4.85554 4.88641 4.97451 5.03309 5.08131 5.14354 5.20259 5.27980 5.31337 5.36051 5.50962 5.59997 5.64678 6.01583 6.40186 6.82510 7.45816 8.41781 8.63539 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.060724 B = 0.007353 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.993580 B = 3807.015292 C = 4195.110827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.084 4.084 5 H 0.076 0.924 6 C -0.110 4.110 7 C 0.111 3.889 8 N -0.657 5.657 9 C 0.548 3.452 10 O -0.636 6.636 11 C -0.565 4.565 12 H 0.087 0.913 13 C 0.026 3.974 14 N -0.824 5.824 15 Si 1.002 2.998 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.248 1.248 19 C 0.116 3.884 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.276 0.724 32 H 0.041 0.959 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 13.857 -6.060 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.103 4.103 5 H 0.094 0.906 6 C -0.148 4.148 7 C -0.012 4.012 8 N -0.395 5.395 9 C 0.354 3.646 10 O -0.524 6.524 11 C -0.602 4.602 12 H 0.105 0.895 13 C -0.189 4.189 14 N -0.453 5.453 15 Si 0.820 3.180 16 H -0.184 1.184 17 H -0.195 1.195 18 H -0.171 1.171 19 C -0.008 4.008 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.237 13.359 -6.015 15.251 hybrid contribution -0.006 -0.857 0.526 1.006 sum 4.231 12.502 -5.489 14.294 Atomic orbital electron populations 1.21875 0.95429 1.01098 1.02326 1.21041 0.95664 0.97153 0.95974 1.21786 1.01651 0.93980 1.02238 1.22381 0.95917 0.92431 0.99558 0.90608 1.22692 0.95160 0.96557 1.00380 1.21864 0.86822 0.92836 0.99723 1.48582 1.14015 1.24960 1.51892 1.18481 0.88529 0.78439 0.79116 1.90539 1.29341 1.63732 1.68766 1.21404 0.98560 1.08914 1.31296 0.89531 1.27078 0.99057 0.96423 0.96339 1.70204 1.25107 1.15413 1.34583 0.84969 0.77585 0.77261 0.78166 1.18385 1.19536 1.17092 1.22019 0.92284 0.92982 0.93482 0.92724 0.91002 0.94446 0.90892 0.91587 0.91536 0.92633 0.89598 0.87711 0.93058 0.93138 0.91457 0.94028 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.99 71.98 0.65 -2.73 16 2 C -0.08 -1.75 2.43 -10.79 -0.03 -1.77 16 3 C -0.14 -2.27 9.04 71.98 0.65 -1.62 16 4 C -0.08 -2.41 2.56 -9.40 -0.02 -2.44 16 5 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 6 C -0.11 -2.87 5.59 31.78 0.18 -2.70 16 7 C 0.11 4.15 6.04 86.72 0.52 4.67 16 8 N -0.66 -32.49 3.33 -816.90 -2.72 -35.21 16 9 C 0.55 34.17 7.78 86.36 0.67 34.84 16 10 O -0.64 -45.54 15.27 -4.33 -0.07 -45.60 16 11 C -0.57 -33.63 9.06 24.83 0.22 -33.40 16 12 H 0.09 4.64 7.16 -2.91 -0.02 4.62 16 13 C 0.03 1.49 5.50 85.30 0.47 1.96 16 14 N -0.82 -52.20 11.83 21.84 0.26 -51.94 16 15 Si 1.00 41.95 29.56 68.60 2.03 43.98 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 19 C 0.12 4.81 5.34 86.85 0.46 5.27 16 20 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.04 0.99 7.27 -2.38 -0.02 0.97 16 23 H 0.07 1.59 8.11 -2.38 -0.02 1.57 16 24 H 0.07 0.96 7.50 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.09 1.98 8.01 -2.38 -0.02 1.96 16 28 H 0.10 2.08 8.13 -2.39 -0.02 2.06 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.28 15.70 8.29 -92.71 -0.77 14.94 16 32 H 0.04 1.71 8.04 -2.38 -0.02 1.69 16 33 H 0.03 1.49 7.94 -2.38 -0.02 1.47 16 Total: -1.00 -79.21 271.09 4.35 -74.87 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.06 Total: 11.81 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 3.78 Total: 2.09 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.46 Total: -87.14 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.07 Total: -45.60 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -79.21 4.35 -74.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166189739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.490 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds