Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47343 * 120.00400 * 2 1 3 5 5 H 1.08995 * 110.88206 * 296.11680 * 4 2 1 6 6 C 1.55150 * 111.00591 * 59.99979 * 4 2 1 7 7 C 1.54322 * 102.94276 * 153.57347 * 6 4 2 8 8 N 1.47014 * 107.27205 * 337.81228 * 7 6 4 9 9 C 1.34775 * 125.64803 * 178.90547 * 8 7 6 10 10 O 1.21691 * 119.99968 * 180.02562 * 9 8 7 11 11 C 1.46371 * 120.00181 * 0.02562 * 9 8 7 12 12 H 1.08007 * 120.00059 * 6.18956 * 11 9 8 13 13 C 1.40053 * 120.00252 * 186.18190 * 11 9 8 14 14 N 1.30664 * 120.00157 * 353.87771 * 13 11 9 15 15 Si 1.86803 * 120.00186 * 174.15672 * 13 11 9 16 16 H 1.48500 * 109.46897 * 274.73917 * 15 13 11 17 17 H 1.48505 * 109.46989 * 34.73537 * 15 13 11 18 18 H 1.48501 * 109.47500 * 154.73522 * 15 13 11 19 19 C 1.47420 * 108.70265 * 359.16305 * 8 7 6 20 20 H 1.08999 * 109.47256 * 60.00011 * 1 2 3 21 21 H 1.09009 * 109.46762 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47394 * 299.99601 * 1 2 3 23 23 H 1.09009 * 109.46888 * 240.00266 * 2 1 3 24 24 H 1.08998 * 109.47309 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47318 * 300.00578 * 3 2 1 26 26 H 1.08999 * 109.46662 * 59.99951 * 3 2 1 27 27 H 1.09006 * 110.72233 * 35.21494 * 6 4 2 28 28 H 1.08999 * 110.87261 * 272.01417 * 6 4 2 29 29 H 1.08997 * 109.88475 * 218.38858 * 7 6 4 30 30 H 1.09004 * 110.00536 * 97.29935 * 7 6 4 31 31 H 0.97000 * 120.00151 * 179.97438 * 14 13 11 32 32 H 1.09003 * 110.36644 * 142.74438 * 19 8 7 33 33 H 1.09001 * 110.36667 * 265.06201 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7469 -0.1874 2.1530 6 6 1.5427 -2.1905 1.2851 7 6 2.6251 -2.9015 2.1243 8 7 3.8428 -2.0808 2.0516 9 6 5.0095 -2.3501 2.6702 10 8 5.9559 -1.5965 2.5388 11 6 5.1384 -3.5490 3.5000 12 1 4.3342 -4.2690 3.5372 13 6 6.3045 -3.7626 4.2456 14 7 7.3238 -2.9564 4.1096 15 14 6.4056 -5.2045 5.4289 16 1 5.8183 -4.8144 6.7358 17 1 5.6517 -6.3561 4.8714 18 1 7.8271 -5.5894 5.6200 19 6 3.5742 -0.9114 1.1952 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.4991 -2.6077 0.2789 28 1 0.5699 -2.2594 1.7721 29 1 2.8208 -3.8923 1.7143 30 1 2.2972 -2.9873 3.1603 31 1 8.1313 -3.1041 4.6263 32 1 4.0803 -0.0294 1.5878 33 1 3.8939 -1.1091 0.1720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166189843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = -58.072658 kcal Electronic energy + Delta-G solvation = -14266.737730 eV Core-core repulsion = 11905.499402 eV Total energy + Delta-G solvation = -2361.238329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82219 -36.36630 -34.14232 -32.45851 -29.66041 -28.47673 -26.81993 -25.99585 -22.61952 -21.31148 -19.51218 -19.05102 -16.69258 -15.49875 -15.24369 -14.65429 -14.26749 -13.45371 -13.35840 -13.11073 -12.73942 -12.68811 -12.10803 -11.84032 -11.50822 -11.35603 -11.23556 -11.03644 -10.84998 -10.69584 -10.47621 -10.23841 -10.18679 -10.07226 -10.05740 -8.82772 -7.60357 -7.11922 -6.18305 -4.61388 3.15723 3.21754 3.24968 4.10816 4.57327 4.62556 4.86862 4.96846 5.05180 5.36570 5.51640 5.54162 5.71105 5.72458 5.81843 5.87901 5.91989 5.99819 6.09102 6.17677 6.25935 6.35828 6.40004 6.48483 6.58472 6.74180 6.77726 7.44985 7.47629 8.14685 8.46565 9.04239 9.54754 10.60382 10.79496 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.059891 B = 0.007361 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.401322 B = 3802.784136 C = 4183.839077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.098 4.098 5 H 0.077 0.923 6 C -0.127 4.127 7 C 0.120 3.880 8 N -0.646 5.646 9 C 0.571 3.429 10 O -0.578 6.578 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.265 1.265 18 H -0.280 1.280 19 C 0.121 3.879 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 2.467 -5.226 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.117 4.117 5 H 0.095 0.905 6 C -0.164 4.164 7 C -0.004 4.004 8 N -0.387 5.387 9 C 0.377 3.623 10 O -0.461 6.461 11 C -0.577 4.577 12 H 0.087 0.913 13 C -0.133 4.133 14 N -0.398 5.398 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.189 1.189 18 H -0.205 1.205 19 C -0.003 4.003 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.592 2.903 -5.201 13.032 hybrid contribution -0.034 -0.771 0.609 0.983 sum -11.626 2.132 -4.593 12.680 Atomic orbital electron populations 1.21835 0.95456 1.01657 1.01259 1.21054 0.95363 0.96140 0.97807 1.21853 1.01633 0.95857 1.01207 1.22387 0.96040 0.95449 0.97829 0.90464 1.22695 0.98184 0.95340 1.00227 1.21572 0.85558 0.94582 0.98713 1.48699 1.12533 1.24379 1.53041 1.18030 0.78759 0.86751 0.78739 1.90602 1.37429 1.52380 1.65688 1.20889 1.02707 1.06057 1.28004 0.91289 1.25733 0.94713 0.96505 0.96319 1.70024 1.02637 1.33753 1.33341 0.86383 0.77849 0.81693 0.80808 1.19635 1.18940 1.20475 1.21780 0.92916 0.91123 0.94455 0.93141 0.92562 0.92864 0.91195 0.92234 0.93119 0.92812 0.91450 0.91237 0.93152 0.92969 0.92075 0.92013 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.97 37.16 0.33 -1.14 16 2 C -0.08 -1.04 2.44 -90.62 -0.22 -1.26 16 3 C -0.15 -1.74 9.05 37.16 0.34 -1.40 16 4 C -0.10 -1.49 2.55 -88.59 -0.23 -1.71 16 5 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 6 C -0.13 -1.84 5.29 -24.90 -0.13 -1.98 16 7 C 0.12 2.31 6.06 -3.07 -0.02 2.30 16 8 N -0.65 -15.58 3.33 -172.33 -0.57 -16.16 16 9 C 0.57 17.07 7.78 -12.99 -0.10 16.97 16 10 O -0.58 -19.54 15.30 5.20 0.08 -19.46 16 11 C -0.54 -15.74 9.05 -35.63 -0.32 -16.06 16 12 H 0.07 1.85 7.18 -52.48 -0.38 1.48 16 13 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 14 N -0.77 -23.55 11.85 55.55 0.66 -22.89 16 15 Si 0.91 20.49 29.56 -169.99 -5.03 15.46 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.12 2.45 5.62 -2.65 -0.01 2.43 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.55 7.28 -51.92 -0.38 0.17 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.87 8.07 -51.92 -0.42 0.45 16 24 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 28 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 32 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 33 H 0.04 0.84 7.98 -51.93 -0.41 0.43 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -34.38 271.13 -6.56 -40.94 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.33 Total: -2.51 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.46 Total: 0.53 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.09 Total: -39.05 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.08 Total: -19.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.38 -6.56 -40.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166189843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.133 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds