Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47343 * 120.00400 * 2 1 3 5 5 H 1.08995 * 110.88206 * 296.11680 * 4 2 1 6 6 C 1.55150 * 111.00591 * 59.99979 * 4 2 1 7 7 C 1.54322 * 102.94276 * 153.57347 * 6 4 2 8 8 N 1.47014 * 107.27205 * 337.81228 * 7 6 4 9 9 C 1.34775 * 125.64803 * 178.90547 * 8 7 6 10 10 O 1.21691 * 119.99968 * 180.02562 * 9 8 7 11 11 C 1.46371 * 120.00181 * 0.02562 * 9 8 7 12 12 H 1.08007 * 120.00059 * 6.18956 * 11 9 8 13 13 C 1.40053 * 120.00252 * 186.18190 * 11 9 8 14 14 N 1.30664 * 120.00157 * 353.87771 * 13 11 9 15 15 Si 1.86803 * 120.00186 * 174.15672 * 13 11 9 16 16 H 1.48500 * 109.46897 * 274.73917 * 15 13 11 17 17 H 1.48505 * 109.46989 * 34.73537 * 15 13 11 18 18 H 1.48501 * 109.47500 * 154.73522 * 15 13 11 19 19 C 1.47420 * 108.70265 * 359.16305 * 8 7 6 20 20 H 1.08999 * 109.47256 * 60.00011 * 1 2 3 21 21 H 1.09009 * 109.46762 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47394 * 299.99601 * 1 2 3 23 23 H 1.09009 * 109.46888 * 240.00266 * 2 1 3 24 24 H 1.08998 * 109.47309 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47318 * 300.00578 * 3 2 1 26 26 H 1.08999 * 109.46662 * 59.99951 * 3 2 1 27 27 H 1.09006 * 110.72233 * 35.21494 * 6 4 2 28 28 H 1.08999 * 110.87261 * 272.01417 * 6 4 2 29 29 H 1.08997 * 109.88475 * 218.38858 * 7 6 4 30 30 H 1.09004 * 110.00536 * 97.29935 * 7 6 4 31 31 H 0.97000 * 120.00151 * 179.97438 * 14 13 11 32 32 H 1.09003 * 110.36644 * 142.74438 * 19 8 7 33 33 H 1.09001 * 110.36667 * 265.06201 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7469 -0.1874 2.1530 6 6 1.5427 -2.1905 1.2851 7 6 2.6251 -2.9015 2.1243 8 7 3.8428 -2.0808 2.0516 9 6 5.0095 -2.3501 2.6702 10 8 5.9559 -1.5965 2.5388 11 6 5.1384 -3.5490 3.5000 12 1 4.3342 -4.2690 3.5372 13 6 6.3045 -3.7626 4.2456 14 7 7.3238 -2.9564 4.1096 15 14 6.4056 -5.2045 5.4289 16 1 5.8183 -4.8144 6.7358 17 1 5.6517 -6.3561 4.8714 18 1 7.8271 -5.5894 5.6200 19 6 3.5742 -0.9114 1.1952 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.4991 -2.6077 0.2789 28 1 0.5699 -2.2594 1.7721 29 1 2.8208 -3.8923 1.7143 30 1 2.2972 -2.9873 3.1603 31 1 8.1313 -3.1041 4.6263 32 1 4.0803 -0.0294 1.5878 33 1 3.8939 -1.1091 0.1720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166189843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = -81.472563 kcal Electronic energy + Delta-G solvation = -14267.752426 eV Core-core repulsion = 11905.499402 eV Total energy + Delta-G solvation = -2362.253025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43155 -38.25983 -35.63683 -34.67222 -31.27623 -29.99628 -28.06315 -27.76843 -24.30271 -22.59834 -21.06625 -20.64500 -18.62224 -17.66497 -16.71497 -16.22295 -15.85910 -15.15231 -14.71823 -14.51720 -14.17898 -13.97508 -13.65774 -13.23470 -13.06183 -12.92936 -12.74472 -12.66448 -12.49725 -12.28600 -12.02727 -11.76524 -11.43188 -11.34123 -11.29366 -10.95980 -9.91847 -9.10961 -8.33993 -6.89032 1.37440 1.40120 1.54930 2.21916 2.41023 2.87573 3.52610 3.63772 3.81535 3.88385 4.24938 4.39442 4.44181 4.49228 4.58428 4.79344 4.85813 4.88859 4.97650 5.03760 5.08414 5.14470 5.19757 5.28231 5.31720 5.35981 5.51693 5.59760 5.64695 6.01530 6.39967 6.82451 7.45532 8.41342 8.63094 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.059891 B = 0.007361 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.401322 B = 3802.784136 C = 4183.839077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.083 4.083 5 H 0.075 0.925 6 C -0.110 4.110 7 C 0.110 3.890 8 N -0.657 5.657 9 C 0.548 3.452 10 O -0.636 6.636 11 C -0.567 4.567 12 H 0.087 0.913 13 C 0.026 3.974 14 N -0.823 5.823 15 Si 1.001 2.999 16 H -0.259 1.259 17 H -0.248 1.248 18 H -0.271 1.271 19 C 0.115 3.885 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.276 0.724 32 H 0.031 0.969 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 1.152 -5.173 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.103 4.103 5 H 0.094 0.906 6 C -0.147 4.147 7 C -0.013 4.013 8 N -0.394 5.394 9 C 0.355 3.645 10 O -0.524 6.524 11 C -0.603 4.603 12 H 0.105 0.895 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.820 3.180 16 H -0.183 1.183 17 H -0.171 1.171 18 H -0.196 1.196 19 C -0.008 4.008 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.341 1.589 -5.182 15.331 hybrid contribution 0.793 -0.305 0.530 1.001 sum -13.548 1.285 -4.651 14.382 Atomic orbital electron populations 1.21795 0.92971 1.02642 1.02274 1.21039 0.97243 0.95669 0.95920 1.21865 1.00260 0.96141 1.02386 1.22330 0.91675 0.96679 0.99567 0.90638 1.22688 0.97800 0.93567 1.00676 1.21875 0.84935 0.94588 0.99881 1.48578 1.12614 1.26041 1.52171 1.18479 0.79754 0.86945 0.79344 1.90538 1.40011 1.54038 1.67836 1.21386 1.03918 1.06449 1.28527 0.89535 1.27074 0.93601 1.00060 0.98106 1.70198 1.03713 1.36511 1.34854 0.84987 0.78448 0.76955 0.77613 1.18321 1.17133 1.19563 1.21978 0.96829 0.88709 0.93299 0.91579 0.91586 0.92500 0.91076 0.94460 0.91028 0.92577 0.89613 0.87680 0.93172 0.93037 0.91433 0.94998 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.97 71.98 0.65 -1.62 16 2 C -0.08 -1.76 2.44 -10.79 -0.03 -1.78 16 3 C -0.15 -3.31 9.05 71.98 0.65 -2.65 16 4 C -0.08 -2.40 2.55 -9.48 -0.02 -2.43 16 5 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 6 C -0.11 -2.86 5.29 31.78 0.17 -2.69 16 7 C 0.11 4.13 6.06 86.73 0.53 4.66 16 8 N -0.66 -32.47 3.33 -817.35 -2.72 -35.19 16 9 C 0.55 34.20 7.78 86.36 0.67 34.87 16 10 O -0.64 -45.57 15.30 -4.32 -0.07 -45.64 16 11 C -0.57 -33.70 9.05 24.83 0.22 -33.47 16 12 H 0.09 4.65 7.18 -2.91 -0.02 4.63 16 13 C 0.03 1.53 5.49 85.31 0.47 2.00 16 14 N -0.82 -52.16 11.85 21.84 0.26 -51.90 16 15 Si 1.00 41.94 29.56 68.60 2.03 43.97 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 17 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 C 0.12 4.79 5.62 86.78 0.49 5.28 16 20 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.07 0.97 7.28 -2.38 -0.02 0.95 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.58 8.07 -2.38 -0.02 1.56 16 24 H 0.04 0.97 7.52 -2.39 -0.02 0.95 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.97 8.04 -2.38 -0.02 1.95 16 28 H 0.10 2.09 8.11 -2.39 -0.02 2.07 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 32 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 33 H 0.04 1.70 7.98 -2.39 -0.02 1.68 16 Total: -1.00 -79.22 271.13 4.36 -74.86 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.06 Total: 11.75 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 3.79 Total: 2.16 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.46 Total: -87.09 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.07 Total: -45.64 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -79.22 4.36 -74.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166189843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.615 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds