Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47113 * 2 1 4 4 C 1.53004 * 109.47309 * 239.99988 * 2 1 3 5 5 C 1.53001 * 109.46957 * 120.00085 * 2 1 3 6 6 H 1.09002 * 110.88491 * 183.55776 * 5 2 1 7 7 C 1.54633 * 110.96910 * 59.75312 * 5 2 1 8 8 C 1.51276 * 104.19485 * 217.08333 * 7 5 2 9 9 O 1.21293 * 124.94309 * 196.28986 * 8 7 5 10 10 N 1.34414 * 110.11884 * 16.24948 * 8 7 5 11 11 C 1.37096 * 124.35613 * 180.38947 * 10 8 7 12 12 H 1.08005 * 119.99466 * 12.54349 * 11 10 8 13 13 C 1.38943 * 120.00404 * 192.55371 * 11 10 8 14 14 N 1.31412 * 120.00326 * 9.35077 * 13 11 10 15 15 Si 1.86804 * 120.00183 * 189.35147 * 13 11 10 16 16 H 1.48499 * 109.47106 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46810 * 119.99730 * 15 13 11 18 18 H 1.48493 * 109.47475 * 240.00011 * 15 13 11 19 19 C 1.46765 * 111.29978 * 0.40778 * 10 8 7 20 20 H 1.08997 * 109.47498 * 306.41875 * 1 2 3 21 21 H 1.09003 * 109.46887 * 66.42225 * 1 2 3 22 22 H 1.08999 * 109.46955 * 186.41732 * 1 2 3 23 23 H 1.09009 * 109.47135 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47720 * 299.99977 * 3 2 1 25 25 H 1.09003 * 109.47085 * 59.99937 * 3 2 1 26 26 H 1.09000 * 109.47252 * 300.00577 * 4 2 1 27 27 H 1.09007 * 109.46756 * 59.99942 * 4 2 1 28 28 H 1.08999 * 109.47253 * 180.02562 * 4 2 1 29 29 H 1.09002 * 110.48347 * 98.40119 * 7 5 2 30 30 H 1.08998 * 110.48692 * 335.76330 * 7 5 2 31 31 H 0.96993 * 120.00349 * 179.97438 * 14 13 11 32 32 H 1.09001 * 110.24670 * 101.98261 * 19 10 8 33 33 H 1.09000 * 110.25111 * 223.89327 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.1278 -0.6803 1.3047 7 6 1.5386 -2.1836 1.2873 8 6 1.2611 -2.4426 2.7517 9 8 1.1209 -3.5401 3.2487 10 7 1.1933 -1.2796 3.4222 11 6 0.9617 -1.1756 4.7694 12 1 1.0206 -2.0528 5.3967 13 6 0.6508 0.0582 5.3277 14 7 0.3980 1.0866 4.5497 15 14 0.5922 0.2551 7.1844 16 1 0.9136 -1.0429 7.8302 17 1 1.5849 1.2761 7.6054 18 1 -0.7678 0.6887 7.5936 19 6 1.3988 -0.1351 2.5266 20 1 -0.3634 0.6101 0.8269 21 1 -0.3633 0.4111 -0.9419 22 1 -0.3633 -1.0212 0.1149 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6767 -0.2074 -2.1393 28 1 3.1300 -0.7217 -1.2490 29 1 2.3095 -2.8608 0.9195 30 1 0.6256 -2.2892 0.7015 31 1 0.1806 1.9478 4.9395 32 1 0.4439 0.3335 2.2883 33 1 2.0692 0.5897 2.9883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167259703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -46.691761 kcal Electronic energy + Delta-G solvation = -14859.938442 eV Core-core repulsion = 12499.193626 eV Total energy + Delta-G solvation = -2360.744816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.63745 -36.81261 -34.57367 -32.33215 -29.76929 -27.56287 -26.97417 -25.64766 -24.87184 -21.67189 -19.10686 -17.93276 -16.97674 -15.70688 -15.14155 -14.33063 -13.95025 -13.77211 -13.45116 -13.33118 -12.67560 -12.51268 -12.13625 -11.88321 -11.48369 -11.45373 -11.21974 -11.13424 -10.81802 -10.74885 -10.43897 -10.36487 -10.08863 -9.87357 -9.74402 -9.04899 -8.28554 -7.72985 -6.34354 -3.82488 3.14082 3.24341 3.31285 3.94605 4.13739 4.96266 5.04936 5.15139 5.20603 5.22997 5.63282 5.66995 5.73931 5.88106 5.91694 5.98322 6.07168 6.15345 6.20127 6.31909 6.34656 6.49604 6.53325 6.65160 6.73599 6.77771 7.09925 7.33150 7.52195 7.98641 8.52597 9.17288 9.37250 10.10475 10.72710 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.010886 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.159790 B = 2571.530933 C = 3111.271826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.106 4.106 6 H 0.075 0.925 7 C -0.143 4.143 8 C 0.441 3.559 9 O -0.597 6.597 10 N -0.443 5.443 11 C -0.300 4.300 12 H 0.100 0.900 13 C 0.029 3.971 14 N -0.885 5.885 15 Si 0.927 3.073 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.138 3.862 20 H 0.068 0.932 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.268 0.732 32 H 0.082 0.918 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 3.376 -9.168 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.125 4.125 6 H 0.093 0.907 7 C -0.184 4.184 8 C 0.229 3.771 9 O -0.483 6.483 10 N -0.161 5.161 11 C -0.427 4.427 12 H 0.118 0.882 13 C -0.174 4.174 14 N -0.525 5.525 15 Si 0.754 3.246 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.014 3.986 20 H 0.087 0.913 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.167 3.084 -8.788 9.562 hybrid contribution -0.030 0.357 0.859 0.931 sum 2.137 3.441 -7.929 8.904 Atomic orbital electron populations 1.22063 0.94687 1.02344 1.01507 1.20378 0.95709 0.95182 0.94134 1.21865 1.00540 0.95530 1.01858 1.21884 1.00687 1.00384 0.96732 1.22408 0.99920 0.94588 0.95631 0.90668 1.22314 1.02152 0.96837 0.97059 1.20346 0.83889 0.84682 0.88172 1.90509 1.57987 1.25505 1.74316 1.43961 1.59712 1.05176 1.07261 1.19667 1.45425 0.95874 0.81763 0.88185 1.25272 0.96351 0.95365 1.00365 1.69918 1.46041 1.01607 1.34958 0.85835 0.77840 0.78543 0.82365 1.19264 1.20627 1.20689 1.22007 1.01158 0.88892 0.86502 0.91295 0.93335 0.92416 0.93062 0.93236 0.91719 0.92553 0.93125 0.92960 0.90525 0.89333 0.92211 0.90057 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.80 37.16 0.29 -1.94 16 2 C -0.05 -0.78 0.58 -154.51 -0.09 -0.87 16 3 C -0.14 -1.90 8.33 37.15 0.31 -1.59 16 4 C -0.14 -1.72 8.25 37.16 0.31 -1.41 16 5 C -0.11 -1.90 2.51 -88.99 -0.22 -2.12 16 6 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 7 C -0.14 -2.80 5.18 -26.74 -0.14 -2.94 16 8 C 0.44 11.45 7.97 -10.87 -0.09 11.37 16 9 O -0.60 -17.68 17.61 5.55 0.10 -17.59 16 10 N -0.44 -11.79 3.05 -113.63 -0.35 -12.13 16 11 C -0.30 -8.54 9.85 -14.94 -0.15 -8.69 16 12 H 0.10 2.96 7.73 -52.48 -0.41 2.56 16 13 C 0.03 0.77 5.39 -17.47 -0.09 0.68 16 14 N -0.89 -23.40 10.59 55.50 0.59 -22.81 16 15 Si 0.93 20.86 29.56 -169.99 -5.03 15.83 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.14 3.09 3.96 -3.12 -0.01 3.08 16 20 H 0.07 1.16 6.19 -51.93 -0.32 0.83 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.89 5.95 -51.93 -0.31 0.59 16 23 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16 26 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 27 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.61 5.60 -51.93 -0.29 1.32 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.08 1.88 4.98 -51.93 -0.26 1.62 16 33 H 0.07 1.69 7.45 -51.93 -0.39 1.31 16 LS Contribution 259.89 15.07 3.92 3.92 Total: -1.00 -30.83 259.89 -5.49 -36.32 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.83 Total: 0.89 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 0.11 Total: -4.43 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.24 Total: -34.95 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.10 Total: -17.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.83 -5.49 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167259703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.370 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds