Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.52998 * 109.47254 * 239.99951 * 2 1 3 5 5 C 1.53001 * 109.47061 * 119.99577 * 2 1 3 6 6 H 1.09000 * 110.86012 * 296.42510 * 5 2 1 7 7 C 1.54636 * 110.96777 * 60.21638 * 5 2 1 8 8 C 1.51280 * 104.19676 * 142.95174 * 7 5 2 9 9 O 1.21288 * 124.93882 * 163.78218 * 8 7 5 10 10 N 1.34422 * 110.11384 * 343.74479 * 8 7 5 11 11 C 1.37095 * 124.34749 * 179.57110 * 10 8 7 12 12 H 1.08003 * 119.99718 * 347.48816 * 11 10 8 13 13 C 1.38944 * 120.00152 * 167.49446 * 11 10 8 14 14 N 1.31416 * 120.00121 * 350.65274 * 13 11 10 15 15 Si 1.86802 * 120.00160 * 170.65853 * 13 11 10 16 16 H 1.48498 * 109.47115 * 89.99666 * 15 13 11 17 17 H 1.48502 * 109.47046 * 209.99343 * 15 13 11 18 18 H 1.48497 * 109.47008 * 329.99961 * 15 13 11 19 19 C 1.46763 * 111.30220 * 359.59460 * 10 8 7 20 20 H 1.08997 * 109.46749 * 300.00433 * 1 2 3 21 21 H 1.09006 * 109.46840 * 59.99634 * 1 2 3 22 22 H 1.08991 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47365 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47179 * 299.99547 * 3 2 1 25 25 H 1.08998 * 109.47050 * 59.99595 * 3 2 1 26 26 H 1.08999 * 109.46916 * 293.58719 * 4 2 1 27 27 H 1.08998 * 109.46893 * 53.58517 * 4 2 1 28 28 H 1.08998 * 109.47265 * 173.58163 * 4 2 1 29 29 H 1.09003 * 110.48114 * 261.63339 * 7 5 2 30 30 H 1.09006 * 110.48551 * 24.13785 * 7 5 2 31 31 H 0.96997 * 120.00054 * 180.02562 * 14 13 11 32 32 H 1.08993 * 110.24618 * 258.01181 * 19 10 8 33 33 H 1.09002 * 110.24582 * 136.01258 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.7420 -0.1897 2.1531 7 6 1.5482 -2.1869 1.2817 8 6 2.7137 -2.9566 1.8628 9 8 2.6484 -4.0809 2.3130 10 7 3.8324 -2.2133 1.8068 11 6 5.0581 -2.6250 2.2626 12 1 5.1363 -3.5089 2.8782 13 6 6.1997 -1.9049 1.9326 14 7 6.1345 -0.9426 1.0400 15 14 7.8272 -2.3047 2.7577 16 1 8.5463 -3.3319 1.9622 17 1 8.6550 -1.0746 2.8416 18 1 7.5741 -2.8254 4.1252 19 6 3.5729 -0.9045 1.1957 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.7734 -1.7767 -1.1936 27 1 1.5860 -0.2780 -2.1354 28 1 3.1239 -0.6228 -1.3085 29 1 0.6714 -2.2809 1.9224 30 1 1.3224 -2.5358 0.2740 31 1 6.9315 -0.4402 0.8094 32 1 3.9180 -0.8959 0.1619 33 1 4.0670 -0.1175 1.7656 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167259800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -46.629513 kcal Electronic energy + Delta-G solvation = -14859.345595 eV Core-core repulsion = 12498.603479 eV Total energy + Delta-G solvation = -2360.742117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63490 -36.81178 -34.57279 -32.33084 -29.76782 -27.56284 -26.97419 -25.64691 -24.86929 -21.67099 -19.10546 -17.93199 -16.97497 -15.70525 -15.13657 -14.33627 -13.94817 -13.77146 -13.45383 -13.32998 -12.67405 -12.51057 -12.13183 -11.88195 -11.48395 -11.45555 -11.21385 -11.12322 -10.81669 -10.73978 -10.47454 -10.36063 -10.10184 -9.87107 -9.74287 -9.04079 -8.28418 -7.72799 -6.34184 -3.82246 3.15692 3.23926 3.29778 3.94628 4.13922 4.96347 5.04998 5.15206 5.20611 5.23144 5.63364 5.67078 5.73975 5.88104 5.91789 5.98319 6.07220 6.15375 6.20136 6.31965 6.34697 6.49722 6.53338 6.65183 6.73623 6.77816 7.09955 7.33092 7.52022 7.98566 8.52709 9.17320 9.37336 10.10635 10.72838 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.036877 B = 0.010884 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.091653 B = 2572.076912 C = 3111.735742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.106 4.106 6 H 0.075 0.925 7 C -0.143 4.143 8 C 0.441 3.559 9 O -0.597 6.597 10 N -0.443 5.443 11 C -0.300 4.300 12 H 0.100 0.900 13 C 0.029 3.971 14 N -0.885 5.885 15 Si 0.928 3.072 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.138 3.862 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.268 0.732 32 H 0.082 0.918 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 6.568 -3.690 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.206 4.206 5 C -0.126 4.126 6 H 0.093 0.907 7 C -0.184 4.184 8 C 0.229 3.771 9 O -0.483 6.483 10 N -0.161 5.161 11 C -0.428 4.428 12 H 0.117 0.883 13 C -0.173 4.173 14 N -0.525 5.525 15 Si 0.754 3.246 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.015 3.985 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.418 6.161 -3.524 9.570 hybrid contribution 0.877 0.019 0.303 0.928 sum -5.541 6.180 -3.221 8.904 Atomic orbital electron populations 1.21882 0.95069 1.01687 1.01049 1.20380 0.94849 0.95326 0.94852 1.21866 1.02033 0.95075 1.00817 1.22062 1.02183 1.00264 0.96089 1.22411 0.97864 0.94820 0.97464 0.90671 1.22314 0.98405 0.95471 1.02171 1.20340 0.85536 0.86544 0.84675 1.90507 1.85473 1.19355 1.52994 1.43953 1.07444 1.13351 1.51328 1.19609 0.82071 1.11981 1.29136 0.88254 1.25270 0.99507 0.96384 0.96163 1.69913 1.30025 1.22396 1.30191 0.85900 0.81097 0.77826 0.79734 1.20317 1.20769 1.19460 1.22004 0.89974 0.86381 1.00164 0.92965 0.93124 0.92548 0.91716 0.93238 0.93065 0.92415 0.93336 0.91298 0.90545 0.89337 0.92161 0.90053 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.25 37.16 0.31 -1.41 16 2 C -0.05 -0.78 0.58 -154.51 -0.09 -0.87 16 3 C -0.14 -1.90 8.33 37.16 0.31 -1.59 16 4 C -0.15 -2.22 7.80 37.16 0.29 -1.94 16 5 C -0.11 -1.90 2.51 -88.98 -0.22 -2.13 16 6 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 7 C -0.14 -2.80 5.18 -26.74 -0.14 -2.94 16 8 C 0.44 11.46 7.97 -10.86 -0.09 11.37 16 9 O -0.60 -17.69 17.61 5.55 0.10 -17.59 16 10 N -0.44 -11.78 3.06 -113.63 -0.35 -12.13 16 11 C -0.30 -8.56 9.85 -14.94 -0.15 -8.71 16 12 H 0.10 2.94 7.73 -52.48 -0.41 2.53 16 13 C 0.03 0.78 5.39 -17.47 -0.09 0.69 16 14 N -0.89 -23.40 10.60 55.50 0.59 -22.81 16 15 Si 0.93 20.86 29.56 -169.99 -5.03 15.83 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.14 3.10 3.96 -3.12 -0.01 3.09 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.69 7.17 -51.93 -0.37 0.32 16 23 H 0.06 0.97 7.55 -51.93 -0.39 0.58 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.89 5.95 -51.93 -0.31 0.59 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.15 6.19 -51.93 -0.32 0.83 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.61 5.60 -51.93 -0.29 1.32 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.08 1.88 4.99 -51.93 -0.26 1.62 16 33 H 0.07 1.69 7.45 -51.93 -0.39 1.30 16 LS Contribution 259.90 15.07 3.92 3.92 Total: -1.00 -30.82 259.90 -5.49 -36.30 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.83 Total: 0.91 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 0.11 Total: -4.43 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.24 Total: -34.94 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.10 Total: -17.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.82 -5.49 -36.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167259800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.326 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds