Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.52998 * 109.47254 * 239.99951 * 2 1 3 5 5 C 1.53001 * 109.47061 * 119.99577 * 2 1 3 6 6 H 1.09000 * 110.86012 * 296.42510 * 5 2 1 7 7 C 1.54636 * 110.96777 * 60.21638 * 5 2 1 8 8 C 1.51280 * 104.19676 * 142.95174 * 7 5 2 9 9 O 1.21288 * 124.93882 * 163.78218 * 8 7 5 10 10 N 1.34422 * 110.11384 * 343.74479 * 8 7 5 11 11 C 1.37095 * 124.34749 * 179.57110 * 10 8 7 12 12 H 1.08003 * 119.99718 * 347.48816 * 11 10 8 13 13 C 1.38944 * 120.00152 * 167.49446 * 11 10 8 14 14 N 1.31416 * 120.00121 * 350.65274 * 13 11 10 15 15 Si 1.86802 * 120.00160 * 170.65853 * 13 11 10 16 16 H 1.48498 * 109.47115 * 89.99666 * 15 13 11 17 17 H 1.48502 * 109.47046 * 209.99343 * 15 13 11 18 18 H 1.48497 * 109.47008 * 329.99961 * 15 13 11 19 19 C 1.46763 * 111.30220 * 359.59460 * 10 8 7 20 20 H 1.08997 * 109.46749 * 300.00433 * 1 2 3 21 21 H 1.09006 * 109.46840 * 59.99634 * 1 2 3 22 22 H 1.08991 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47365 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47179 * 299.99547 * 3 2 1 25 25 H 1.08998 * 109.47050 * 59.99595 * 3 2 1 26 26 H 1.08999 * 109.46916 * 293.58719 * 4 2 1 27 27 H 1.08998 * 109.46893 * 53.58517 * 4 2 1 28 28 H 1.08998 * 109.47265 * 173.58163 * 4 2 1 29 29 H 1.09003 * 110.48114 * 261.63339 * 7 5 2 30 30 H 1.09006 * 110.48551 * 24.13785 * 7 5 2 31 31 H 0.96997 * 120.00054 * 180.02562 * 14 13 11 32 32 H 1.08993 * 110.24618 * 258.01181 * 19 10 8 33 33 H 1.09002 * 110.24582 * 136.01258 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.7420 -0.1897 2.1531 7 6 1.5482 -2.1869 1.2817 8 6 2.7137 -2.9566 1.8628 9 8 2.6484 -4.0809 2.3130 10 7 3.8324 -2.2133 1.8068 11 6 5.0581 -2.6250 2.2626 12 1 5.1363 -3.5089 2.8782 13 6 6.1997 -1.9049 1.9326 14 7 6.1345 -0.9426 1.0400 15 14 7.8272 -2.3047 2.7577 16 1 8.5463 -3.3319 1.9622 17 1 8.6550 -1.0746 2.8416 18 1 7.5741 -2.8254 4.1252 19 6 3.5729 -0.9045 1.1957 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.7734 -1.7767 -1.1936 27 1 1.5860 -0.2780 -2.1354 28 1 3.1239 -0.6228 -1.3085 29 1 0.6714 -2.2809 1.9224 30 1 1.3224 -2.5358 0.2740 31 1 6.9315 -0.4402 0.8094 32 1 3.9180 -0.8959 0.1619 33 1 4.0670 -0.1175 1.7656 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167259800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -65.966909 kcal Electronic energy + Delta-G solvation = -14860.184128 eV Core-core repulsion = 12498.603479 eV Total energy + Delta-G solvation = -2361.580649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37165 -38.43089 -36.56958 -34.25493 -31.54156 -28.88143 -28.12886 -27.14500 -26.84116 -23.24632 -21.05975 -19.26745 -19.01451 -17.43071 -17.01298 -16.14989 -15.68555 -15.09488 -14.94169 -14.91620 -14.39214 -14.10782 -13.76375 -13.32287 -13.03590 -12.83405 -12.68212 -12.52044 -12.34117 -12.29921 -12.16049 -12.09309 -11.44999 -11.33186 -11.15811 -10.97218 -10.32255 -9.79365 -8.40458 -5.99150 1.33652 1.37787 1.50821 1.95794 2.24158 3.06238 3.23157 3.68558 3.71406 3.86854 4.19032 4.33392 4.44028 4.48758 4.77893 4.80864 4.93317 4.95825 4.99925 5.08235 5.14722 5.19260 5.26463 5.30123 5.35602 5.45220 5.48457 5.64995 5.71377 5.91676 6.45526 7.09119 7.32284 8.04453 8.64148 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.036877 B = 0.010884 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.091653 B = 2572.076912 C = 3111.735742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C -0.138 4.138 4 C -0.148 4.148 5 C -0.091 4.091 6 H 0.086 0.914 7 C -0.127 4.127 8 C 0.417 3.583 9 O -0.647 6.647 10 N -0.458 5.458 11 C -0.350 4.350 12 H 0.073 0.927 13 C 0.000 4.000 14 N -0.892 5.892 15 Si 0.993 3.007 16 H -0.272 1.272 17 H -0.264 1.264 18 H -0.272 1.272 19 C 0.144 3.856 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.276 0.724 32 H 0.072 0.928 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 8.244 -4.447 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.110 4.110 6 H 0.105 0.895 7 C -0.167 4.167 8 C 0.207 3.793 9 O -0.538 6.538 10 N -0.175 5.175 11 C -0.477 4.477 12 H 0.091 0.909 13 C -0.202 4.202 14 N -0.530 5.530 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.188 1.188 18 H -0.197 1.197 19 C 0.021 3.979 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.243 7.884 -4.309 11.540 hybrid contribution 1.192 -0.484 0.501 1.380 sum -6.051 7.399 -3.808 10.289 Atomic orbital electron populations 1.21850 0.92440 1.02297 1.02698 1.20392 0.96781 0.95286 0.92456 1.21841 1.00550 0.94602 1.02534 1.22045 1.00652 1.00103 0.97680 1.22423 0.94059 0.94425 1.00134 0.89530 1.22263 0.96274 0.95200 1.02933 1.21474 0.87256 0.86401 0.84216 1.90448 1.86571 1.21627 1.55130 1.44315 1.07261 1.14907 1.50990 1.19627 0.84096 1.12757 1.31247 0.90914 1.26083 1.02286 0.95729 0.96144 1.69995 1.31303 1.22019 1.29704 0.84947 0.76744 0.78297 0.78432 1.19740 1.18832 1.19719 1.21984 0.93337 0.83886 0.98648 0.91913 0.90994 0.92494 0.94055 0.90910 0.92009 0.93284 0.90536 0.93944 0.88221 0.87602 0.91372 0.91031 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.25 71.98 0.59 -2.15 16 2 C -0.05 -1.28 0.58 -52.18 -0.03 -1.31 16 3 C -0.14 -3.34 8.33 71.98 0.60 -2.74 16 4 C -0.15 -4.12 7.80 71.98 0.56 -3.56 16 5 C -0.09 -3.14 2.51 -9.73 -0.02 -3.16 16 6 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 7 C -0.13 -4.81 5.18 30.59 0.16 -4.66 16 8 C 0.42 22.21 7.97 87.90 0.70 22.91 16 9 O -0.65 -39.91 17.61 -3.05 -0.05 -39.97 16 10 N -0.46 -25.16 3.06 -631.99 -1.93 -27.09 16 11 C -0.35 -20.75 9.85 84.04 0.83 -19.93 16 12 H 0.07 4.57 7.73 -2.91 -0.02 4.55 16 13 C 0.00 -0.01 5.39 84.92 0.46 0.45 16 14 N -0.89 -47.39 10.60 21.66 0.23 -47.16 16 15 Si 0.99 42.91 29.56 68.60 2.03 44.94 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.14 6.55 3.96 86.83 0.34 6.89 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.06 1.16 7.17 -2.39 -0.02 1.15 16 23 H 0.04 1.18 7.55 -2.39 -0.02 1.17 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.43 5.95 -2.39 -0.01 1.42 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.40 6.19 -2.39 -0.01 1.38 16 29 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.11 3.67 5.60 -2.38 -0.01 3.65 16 31 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.07 3.38 4.99 -2.39 -0.01 3.37 16 33 H 0.05 2.46 7.45 -2.39 -0.02 2.44 16 Total: -1.00 -69.07 259.90 5.55 -63.53 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.08 Total: 13.02 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.19 Total: -7.27 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.70 Total: -74.25 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.05 Total: -39.97 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.07 5.55 -63.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167259800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.439 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds