Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 C 1.46763 * 124.34461 * 90.00401 * 5 4 2 7 7 C 1.54478 * 105.47384 * 197.01586 * 6 5 4 8 8 H 1.08998 * 110.97246 * 92.73384 * 7 6 5 9 9 C 1.50697 * 110.97375 * 216.46730 * 7 6 5 10 10 H 1.08004 * 119.99733 * 359.97438 * 9 7 6 11 11 C 1.37872 * 120.00427 * 179.97438 * 9 7 6 12 12 N 1.31517 * 119.99646 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00420 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46734 * 60.00315 * 13 11 9 15 15 H 1.48492 * 109.47244 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47288 * 300.00610 * 13 11 9 17 17 C 1.54634 * 101.76275 * 334.58415 * 7 6 5 18 18 C 1.34405 * 124.35281 * 269.70120 * 5 4 2 19 19 O 1.21292 * 124.94359 * 359.57680 * 18 5 4 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 24 24 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 29 29 H 1.09002 * 110.24543 * 316.01351 * 6 5 4 30 30 H 1.08999 * 110.24763 * 77.92685 * 6 5 4 31 31 H 0.97007 * 119.99751 * 179.97438 * 12 11 9 32 32 H 1.08999 * 110.48743 * 143.47605 * 17 7 6 33 33 H 1.09002 * 110.48717 * 265.98810 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2258 -1.9488 -0.5843 7 6 5.6664 -1.4370 -0.3633 8 1 5.7829 -1.0189 0.6366 9 6 6.6716 -2.5330 -0.6071 10 1 6.3367 -3.5185 -0.8953 11 6 8.0187 -2.2777 -0.4622 12 7 8.4265 -1.0778 -0.1107 13 14 9.2646 -3.6365 -0.7636 14 1 9.1398 -4.1212 -2.1618 15 1 10.6352 -3.1090 -0.5437 16 1 9.0093 -4.7593 0.1742 17 6 5.7780 -0.3341 -1.4414 18 6 4.3472 0.0899 -1.6900 19 8 4.0130 1.1096 -2.2555 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 3.7718 -2.2208 0.3686 30 1 4.2276 -2.8051 -1.2587 31 1 9.3743 -0.8983 -0.0083 32 1 6.3681 0.5039 -1.0703 33 1 6.2190 -0.7356 -2.3538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238152369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = -57.250326 kcal Electronic energy + Delta-G solvation = -14424.907277 eV Core-core repulsion = 12063.704608 eV Total energy + Delta-G solvation = -2361.202670 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60066 -35.99245 -35.38823 -32.84771 -30.44942 -27.04908 -26.86262 -25.88285 -24.25924 -20.38862 -20.05225 -18.53251 -16.65405 -16.10126 -15.01715 -14.88923 -14.57293 -14.16554 -13.41358 -13.13960 -12.72052 -12.28569 -12.19713 -12.07134 -12.00534 -11.62173 -11.06693 -10.95573 -10.81434 -10.71228 -10.62486 -10.49038 -10.19029 -9.51874 -9.34472 -8.80505 -8.44418 -7.95553 -6.14488 -4.20074 3.26711 3.32614 3.33876 3.45672 3.77723 4.34864 4.99425 5.08167 5.18834 5.24969 5.48603 5.69970 5.78395 5.80604 5.95727 5.96706 6.03743 6.11235 6.20954 6.25978 6.45059 6.51441 6.61752 6.65050 6.81997 7.33999 7.38060 7.59689 7.81426 7.90356 8.21632 8.81554 9.04674 9.45973 10.95458 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.055013 B = 0.007700 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.845754 B = 3635.583245 C = 3837.097869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.139 4.139 4 C 0.130 3.870 5 N -0.623 5.623 6 C 0.106 3.894 7 C 0.047 3.953 8 H 0.047 0.953 9 C -0.521 4.521 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.885 5.885 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.132 4.132 18 C 0.513 3.487 19 O -0.562 6.562 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 -0.687 0.705 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.197 4.197 4 C 0.007 3.993 5 N -0.356 5.356 6 C -0.016 4.016 7 C 0.028 3.972 8 H 0.065 0.935 9 C -0.559 4.559 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.522 5.522 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.173 4.173 18 C 0.303 3.697 19 O -0.441 6.441 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.707 -0.053 0.448 10.716 hybrid contribution 0.733 -0.757 -0.088 1.057 sum -9.974 -0.810 0.360 10.013 Atomic orbital electron populations 1.21770 0.95109 1.01429 1.01726 1.21536 0.95289 0.97452 0.99099 1.21766 1.01999 0.95106 1.00788 1.21324 0.80160 1.00024 0.97796 1.48448 1.04954 1.23298 1.58916 1.22420 0.94674 0.88162 0.96386 1.19621 0.88752 0.93638 0.95196 0.93512 1.20939 0.90607 0.96252 1.48114 0.92046 1.24990 0.98568 0.95587 0.94564 1.69947 1.15727 1.20257 1.46276 0.86600 0.80248 0.81980 0.78855 1.20147 1.21238 1.20142 1.22446 0.90432 1.01896 1.02502 1.21791 0.90198 0.81757 0.75921 1.90588 1.83134 1.26125 1.44288 0.92714 0.92806 0.92699 0.91066 0.92721 0.93594 0.92229 0.91189 0.90845 0.92496 0.92069 0.92613 0.89225 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.11 -1.59 3.13 -90.62 -0.28 -1.88 16 3 C -0.14 -2.18 8.36 37.16 0.31 -1.87 16 4 C 0.13 2.00 5.39 -4.04 -0.02 1.98 16 5 N -0.62 -11.79 2.78 -172.42 -0.48 -12.26 16 6 C 0.11 2.04 6.90 -3.12 -0.02 2.02 16 7 C 0.05 1.09 2.97 -90.14 -0.27 0.83 16 8 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 9 C -0.52 -13.26 8.39 -34.44 -0.29 -13.55 16 10 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 11 C 0.07 1.74 5.37 -17.82 -0.10 1.64 16 12 N -0.89 -24.36 12.84 55.43 0.71 -23.64 16 13 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.13 -3.10 5.81 -26.74 -0.16 -3.25 16 18 C 0.51 11.29 6.60 -10.86 -0.07 11.21 16 19 O -0.56 -13.44 16.51 5.55 0.09 -13.35 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.18 7.92 -51.93 -0.41 0.76 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.16 7.75 -51.93 -0.40 0.75 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 33 H 0.09 2.17 7.89 -51.93 -0.41 1.76 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -28.10 272.12 -6.45 -34.56 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.30 Total: -0.56 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.55 Total: -4.08 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.23 Total: -35.91 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.10 -6.45 -34.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238152369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.692 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds