Wall clock time and date at job start Mon Mar 30 2020 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 C 1.46763 * 124.34461 * 90.00401 * 5 4 2 7 7 C 1.54478 * 105.47384 * 197.01586 * 6 5 4 8 8 H 1.08998 * 110.97246 * 92.73384 * 7 6 5 9 9 C 1.50697 * 110.97375 * 216.46730 * 7 6 5 10 10 H 1.08004 * 119.99733 * 359.97438 * 9 7 6 11 11 C 1.37872 * 120.00427 * 179.97438 * 9 7 6 12 12 N 1.31517 * 119.99646 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00420 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46734 * 60.00315 * 13 11 9 15 15 H 1.48492 * 109.47244 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47288 * 300.00610 * 13 11 9 17 17 C 1.54634 * 101.76275 * 334.58415 * 7 6 5 18 18 C 1.34405 * 124.35281 * 269.70120 * 5 4 2 19 19 O 1.21292 * 124.94359 * 359.57680 * 18 5 4 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 24 24 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 29 29 H 1.09002 * 110.24543 * 316.01351 * 6 5 4 30 30 H 1.08999 * 110.24763 * 77.92685 * 6 5 4 31 31 H 0.97007 * 119.99751 * 179.97438 * 12 11 9 32 32 H 1.08999 * 110.48743 * 143.47605 * 17 7 6 33 33 H 1.09002 * 110.48717 * 265.98810 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2258 -1.9488 -0.5843 7 6 5.6664 -1.4370 -0.3633 8 1 5.7829 -1.0189 0.6366 9 6 6.6716 -2.5330 -0.6071 10 1 6.3367 -3.5185 -0.8953 11 6 8.0187 -2.2777 -0.4622 12 7 8.4265 -1.0778 -0.1107 13 14 9.2646 -3.6365 -0.7636 14 1 9.1398 -4.1212 -2.1618 15 1 10.6352 -3.1090 -0.5437 16 1 9.0093 -4.7593 0.1742 17 6 5.7780 -0.3341 -1.4414 18 6 4.3472 0.0899 -1.6900 19 8 4.0130 1.1096 -2.2555 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 3.7718 -2.2208 0.3686 30 1 4.2276 -2.8051 -1.2587 31 1 9.3743 -0.8983 -0.0083 32 1 6.3681 0.5039 -1.0703 33 1 6.2190 -0.7356 -2.3538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238152369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:57 Heat of formation + Delta-G solvation = -73.334102 kcal Electronic energy + Delta-G solvation = -14425.604722 eV Core-core repulsion = 12063.704608 eV Total energy + Delta-G solvation = -2361.900114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27425 -37.53472 -36.93126 -34.66881 -32.15111 -28.78310 -28.02641 -27.40307 -25.97350 -22.14313 -21.35872 -20.13296 -18.56668 -17.72761 -16.75138 -16.44630 -16.22087 -15.50707 -14.86417 -14.68960 -14.41062 -14.11465 -13.67539 -13.55837 -13.06277 -12.86077 -12.82409 -12.67152 -12.53324 -12.28463 -11.95702 -11.82938 -11.60925 -11.32533 -11.23851 -10.72329 -10.37103 -9.50925 -8.14817 -6.26301 1.48342 1.49040 1.56526 1.69004 2.24367 2.46166 3.18128 3.75198 3.93582 4.02022 4.12654 4.26474 4.45967 4.58341 4.63635 4.69869 4.76877 4.83047 4.90907 4.94789 5.02949 5.06561 5.20997 5.40142 5.42193 5.43941 5.61286 5.81540 5.85366 6.16011 6.31011 6.83239 7.32475 7.43888 8.95066 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.055013 B = 0.007700 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.845754 B = 3635.583245 C = 3837.097869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.611 5.611 6 C 0.117 3.883 7 C 0.041 3.959 8 H 0.021 0.979 9 C -0.529 4.529 10 H 0.072 0.928 11 C 0.015 3.985 12 N -0.921 5.921 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.266 1.266 17 C -0.127 4.127 18 C 0.513 3.487 19 O -0.586 6.586 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.405 -2.456 0.891 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.002 3.998 5 N -0.343 5.343 6 C -0.005 4.005 7 C 0.022 3.978 8 H 0.039 0.961 9 C -0.567 4.567 10 H 0.090 0.910 11 C -0.185 4.185 12 N -0.559 5.559 13 Si 0.784 3.216 14 H -0.196 1.196 15 H -0.217 1.217 16 H -0.191 1.191 17 C -0.168 4.168 18 C 0.302 3.698 19 O -0.468 6.468 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.517 -1.855 0.646 12.670 hybrid contribution 1.259 -0.180 -0.125 1.278 sum -11.258 -2.035 0.521 11.453 Atomic orbital electron populations 1.21711 0.92157 1.02948 1.02446 1.21520 0.97627 0.95660 0.98163 1.21741 0.99430 0.96955 1.01335 1.21679 0.77496 1.02207 0.98410 1.48437 1.06479 1.22044 1.57379 1.22296 0.92129 0.88057 0.98045 1.19536 0.91462 0.93211 0.93585 0.96102 1.21332 0.91160 0.97024 1.47225 0.91037 1.25798 1.00649 0.97537 0.94514 1.70087 1.15850 1.22221 1.47730 0.85594 0.77576 0.79413 0.78989 1.19552 1.21660 1.19071 1.22250 0.91575 1.01050 1.01880 1.21423 0.89986 0.82045 0.76298 1.90566 1.83295 1.27189 1.45721 0.92422 0.90889 0.91644 0.91041 0.93473 0.91779 0.96060 0.87764 0.91421 0.89845 0.90757 0.92884 0.91948 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.19 71.98 0.66 -1.76 16 2 C -0.11 -2.78 3.13 -10.79 -0.03 -2.82 16 3 C -0.14 -4.17 8.36 71.98 0.60 -3.57 16 4 C 0.12 3.45 5.39 86.38 0.47 3.92 16 5 N -0.61 -22.27 2.78 -817.99 -2.27 -24.54 16 6 C 0.12 4.26 6.90 86.83 0.60 4.86 16 7 C 0.04 1.93 2.97 -10.48 -0.03 1.90 16 8 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 9 C -0.53 -26.74 8.39 25.60 0.21 -26.52 16 10 H 0.07 3.40 7.60 -2.91 -0.02 3.38 16 11 C 0.01 0.78 5.37 84.65 0.45 1.23 16 12 N -0.92 -51.88 12.84 21.45 0.28 -51.61 16 13 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 15 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 C -0.13 -6.13 5.81 30.59 0.18 -5.96 16 18 C 0.51 22.81 6.60 87.90 0.58 23.39 16 19 O -0.59 -28.55 16.51 -3.07 -0.05 -28.60 16 20 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.02 0.78 6.16 -2.39 -0.01 0.77 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.02 7.92 -2.39 -0.02 2.00 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 2.58 7.75 -2.39 -0.02 2.56 16 31 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 32 H 0.06 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.08 3.84 7.89 -2.39 -0.02 3.82 16 Total: -1.00 -61.07 272.12 4.73 -56.34 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.06 Total: 10.39 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.69 Total: -5.33 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.99 Total: -76.15 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -61.07 4.73 -56.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238152369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.998 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds