Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52998 * 109.47267 * 120.00609 * 2 1 3 5 5 N 1.46506 * 109.46904 * 174.99643 * 4 2 1 6 6 C 1.46760 * 124.34669 * 89.99982 * 5 4 2 7 7 C 1.54480 * 105.54782 * 162.91674 * 6 5 4 8 8 H 1.09000 * 110.97126 * 267.34164 * 7 6 5 9 9 C 1.50706 * 110.97017 * 143.57833 * 7 6 5 10 10 H 1.08002 * 119.99744 * 359.97438 * 9 7 6 11 11 C 1.37877 * 119.99770 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00446 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99421 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47574 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46793 * 120.00136 * 13 11 9 16 16 H 1.48501 * 109.47217 * 239.99702 * 13 11 9 17 17 C 1.54861 * 101.66110 * 25.43666 * 7 6 5 18 18 C 1.34415 * 124.35027 * 269.97473 * 5 4 2 19 19 O 1.21284 * 124.94104 * 0.41322 * 18 5 4 20 20 H 1.09004 * 109.46487 * 299.99601 * 1 2 3 21 21 H 1.08994 * 109.47417 * 59.99303 * 1 2 3 22 22 H 1.09000 * 109.47510 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46487 * 240.00399 * 2 1 3 24 24 H 1.09003 * 109.47042 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.47549 * 300.00616 * 3 2 1 26 26 H 1.09006 * 109.46666 * 60.01052 * 3 2 1 27 27 H 1.09003 * 109.46934 * 54.99768 * 4 2 1 28 28 H 1.08995 * 109.47116 * 294.99510 * 4 2 1 29 29 H 1.09002 * 110.24740 * 281.96247 * 6 5 4 30 30 H 1.09002 * 110.24616 * 43.87772 * 6 5 4 31 31 H 0.96999 * 120.00316 * 180.02562 * 12 11 9 32 32 H 1.08998 * 110.46775 * 216.51886 * 17 7 6 33 33 H 1.08998 * 110.49332 * 93.88070 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.4250 0.1770 1.7302 7 6 5.7911 -0.5358 1.8406 8 1 5.9246 -0.9721 2.8305 9 6 6.9197 0.4075 1.5124 10 1 6.7067 1.4319 1.2449 11 6 8.2240 -0.0377 1.5528 12 7 8.4832 -1.2855 1.8771 13 14 9.6228 1.1314 1.1453 14 1 9.0695 2.4691 0.8144 15 1 10.5284 1.2468 2.3166 16 1 10.3826 0.6077 -0.0181 17 6 5.6567 -1.6386 0.7617 18 6 4.1648 -1.8547 0.6354 19 8 3.6441 -2.8159 0.1101 20 1 -0.3632 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 1.6054 -1.7199 1.2949 28 1 1.7518 -0.1585 2.1369 29 1 4.4969 1.0273 1.0521 30 1 4.0912 0.5069 2.7140 31 1 9.4008 -1.5986 1.9059 32 1 6.1484 -2.5545 1.0896 33 1 6.0745 -1.2984 -0.1858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238152898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -56.615494 kcal Electronic energy + Delta-G solvation = -14396.843896 eV Core-core repulsion = 12035.668755 eV Total energy + Delta-G solvation = -2361.175141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57793 -36.18825 -35.28690 -32.83565 -30.47254 -27.27060 -26.78233 -25.94707 -24.17456 -20.41079 -20.17417 -18.45154 -16.76856 -15.89417 -15.37621 -14.90959 -14.46456 -14.03630 -13.65444 -12.99292 -12.80283 -12.46773 -12.24381 -12.16435 -11.95989 -11.50535 -11.13139 -11.02883 -10.82450 -10.73346 -10.58148 -10.56160 -10.17894 -9.51114 -9.36143 -8.80727 -8.46273 -7.95649 -6.15204 -4.20649 3.24136 3.33074 3.35563 3.44828 3.75925 4.34412 4.97790 5.04777 5.18236 5.22520 5.47164 5.68010 5.72938 5.77675 5.88410 5.91348 5.98516 6.09593 6.16673 6.20818 6.38046 6.43809 6.57063 6.66393 6.82398 7.33333 7.37298 7.59138 7.81009 7.89122 8.20927 8.81503 9.02972 9.45581 10.94851 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.008229 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.211568 B = 3401.942533 C = 3794.364871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.131 3.869 5 N -0.621 5.621 6 C 0.104 3.896 7 C 0.045 3.955 8 H 0.047 0.953 9 C -0.519 4.519 10 H 0.063 0.937 11 C 0.066 3.934 12 N -0.885 5.885 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.132 4.132 18 C 0.512 3.488 19 O -0.565 6.565 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 4.531 -0.838 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.206 4.206 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.018 4.018 7 C 0.026 3.974 8 H 0.065 0.935 9 C -0.557 4.557 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.522 5.522 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.172 4.172 18 C 0.302 3.698 19 O -0.445 6.445 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.421 3.918 -1.062 11.184 hybrid contribution 0.807 0.620 -0.208 1.039 sum -9.614 4.538 -1.270 10.707 Atomic orbital electron populations 1.21764 0.95094 1.01620 1.01555 1.21544 0.95391 0.97021 0.99500 1.21935 1.02352 0.95330 1.01026 1.21327 0.80216 1.00615 0.97071 1.48441 1.05194 1.22846 1.58986 1.22515 0.90856 0.91268 0.97115 1.19697 0.89754 0.92575 0.95340 0.93479 1.21006 0.90237 0.96670 1.47800 0.91929 1.24994 0.98922 0.95160 0.94665 1.69960 1.20028 1.14958 1.47230 0.86495 0.82120 0.81086 0.78080 1.19650 1.20934 1.20929 1.22481 0.88881 1.02973 1.02876 1.21846 0.91708 0.80688 0.75524 1.90582 1.75670 1.32151 1.46112 0.92749 0.92738 0.92714 0.91000 0.91505 0.93227 0.92961 0.90885 0.91117 0.91736 0.92497 0.92718 0.89225 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.11 -1.59 3.13 -90.62 -0.28 -1.88 16 3 C -0.15 -1.95 8.87 37.16 0.33 -1.62 16 4 C 0.13 2.02 5.35 -4.04 -0.02 1.99 16 5 N -0.62 -11.78 2.71 -172.41 -0.47 -12.25 16 6 C 0.10 2.00 6.23 -3.12 -0.02 1.98 16 7 C 0.05 1.06 2.97 -90.01 -0.27 0.79 16 8 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 9 C -0.52 -13.14 8.40 -34.44 -0.29 -13.43 16 10 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 11 C 0.07 1.72 5.37 -17.82 -0.10 1.63 16 12 N -0.88 -24.31 12.84 55.43 0.71 -23.60 16 13 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.13 -3.09 5.83 -26.62 -0.16 -3.24 16 18 C 0.51 11.43 8.02 -10.86 -0.09 11.34 16 19 O -0.57 -13.94 17.59 5.55 0.10 -13.84 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.07 1.00 5.44 -51.93 -0.28 0.72 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.21 5.78 -51.93 -0.30 0.91 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.09 2.24 8.14 -51.93 -0.42 1.81 16 33 H 0.09 2.18 7.90 -51.93 -0.41 1.77 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -28.42 271.75 -6.30 -34.72 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.17 Total: -0.63 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.55 Total: -3.67 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.25 Total: -35.85 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.84 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.42 -6.30 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238152898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.898 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds