Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52998 * 109.47267 * 120.00609 * 2 1 3 5 5 N 1.46506 * 109.46904 * 174.99643 * 4 2 1 6 6 C 1.46760 * 124.34669 * 89.99982 * 5 4 2 7 7 C 1.54480 * 105.54782 * 162.91674 * 6 5 4 8 8 H 1.09000 * 110.97126 * 267.34164 * 7 6 5 9 9 C 1.50706 * 110.97017 * 143.57833 * 7 6 5 10 10 H 1.08002 * 119.99744 * 359.97438 * 9 7 6 11 11 C 1.37877 * 119.99770 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00446 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99421 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47574 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46793 * 120.00136 * 13 11 9 16 16 H 1.48501 * 109.47217 * 239.99702 * 13 11 9 17 17 C 1.54861 * 101.66110 * 25.43666 * 7 6 5 18 18 C 1.34415 * 124.35027 * 269.97473 * 5 4 2 19 19 O 1.21284 * 124.94104 * 0.41322 * 18 5 4 20 20 H 1.09004 * 109.46487 * 299.99601 * 1 2 3 21 21 H 1.08994 * 109.47417 * 59.99303 * 1 2 3 22 22 H 1.09000 * 109.47510 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46487 * 240.00399 * 2 1 3 24 24 H 1.09003 * 109.47042 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.47549 * 300.00616 * 3 2 1 26 26 H 1.09006 * 109.46666 * 60.01052 * 3 2 1 27 27 H 1.09003 * 109.46934 * 54.99768 * 4 2 1 28 28 H 1.08995 * 109.47116 * 294.99510 * 4 2 1 29 29 H 1.09002 * 110.24740 * 281.96247 * 6 5 4 30 30 H 1.09002 * 110.24616 * 43.87772 * 6 5 4 31 31 H 0.96999 * 120.00316 * 180.02562 * 12 11 9 32 32 H 1.08998 * 110.46775 * 216.51886 * 17 7 6 33 33 H 1.08998 * 110.49332 * 93.88070 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.4250 0.1770 1.7302 7 6 5.7911 -0.5358 1.8406 8 1 5.9246 -0.9721 2.8305 9 6 6.9197 0.4075 1.5124 10 1 6.7067 1.4319 1.2449 11 6 8.2240 -0.0377 1.5528 12 7 8.4832 -1.2855 1.8771 13 14 9.6228 1.1314 1.1453 14 1 9.0695 2.4691 0.8144 15 1 10.5284 1.2468 2.3166 16 1 10.3826 0.6077 -0.0181 17 6 5.6567 -1.6386 0.7617 18 6 4.1648 -1.8547 0.6354 19 8 3.6441 -2.8159 0.1101 20 1 -0.3632 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 1.6054 -1.7199 1.2949 28 1 1.7518 -0.1585 2.1369 29 1 4.4969 1.0273 1.0521 30 1 4.0912 0.5069 2.7140 31 1 9.4008 -1.5986 1.9059 32 1 6.1484 -2.5545 1.0896 33 1 6.0745 -1.2984 -0.1858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238152898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -72.942687 kcal Electronic energy + Delta-G solvation = -14397.551897 eV Core-core repulsion = 12035.668755 eV Total energy + Delta-G solvation = -2361.883141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26977 -37.71831 -36.84540 -34.64622 -32.16534 -28.81542 -28.10251 -27.36931 -25.90602 -22.13425 -21.47408 -20.06943 -18.65844 -17.52401 -16.95814 -16.56917 -16.15874 -15.47140 -15.03829 -14.57059 -14.40777 -14.15611 -13.78557 -13.45822 -13.04842 -12.92437 -12.76707 -12.58860 -12.50642 -12.22130 -12.12088 -11.76424 -11.60566 -11.29005 -11.25523 -10.73390 -10.40493 -9.52281 -8.15154 -6.26246 1.45616 1.48902 1.59123 1.64708 2.21509 2.45808 3.18038 3.74063 3.93704 4.00920 4.17531 4.22170 4.46392 4.55139 4.65880 4.70531 4.77153 4.83582 4.84869 4.97889 5.03146 5.10072 5.25499 5.38531 5.41411 5.50454 5.61682 5.80930 5.84373 6.14442 6.29627 6.83632 7.28148 7.43862 8.95215 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.008229 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.211568 B = 3401.942533 C = 3794.364871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.124 3.876 5 N -0.608 5.608 6 C 0.116 3.884 7 C 0.039 3.961 8 H 0.023 0.977 9 C -0.526 4.526 10 H 0.071 0.929 11 C 0.015 3.985 12 N -0.920 5.920 13 Si 0.958 3.042 14 H -0.260 1.260 15 H -0.282 1.282 16 H -0.287 1.287 17 C -0.125 4.125 18 C 0.510 3.490 19 O -0.594 6.594 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 6.657 -0.589 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.002 3.998 5 N -0.340 5.340 6 C -0.006 4.006 7 C 0.020 3.980 8 H 0.041 0.959 9 C -0.564 4.564 10 H 0.090 0.910 11 C -0.185 4.185 12 N -0.559 5.559 13 Si 0.784 3.216 14 H -0.183 1.183 15 H -0.208 1.208 16 H -0.213 1.213 17 C -0.166 4.166 18 C 0.299 3.701 19 O -0.477 6.477 20 H 0.092 0.908 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.827 6.086 -0.800 13.325 hybrid contribution 1.201 -0.044 -0.268 1.231 sum -10.626 6.043 -1.068 12.271 Atomic orbital electron populations 1.21715 0.92494 1.02080 1.03092 1.21494 0.97500 0.97020 0.97157 1.21906 1.00873 0.94866 1.02672 1.21681 0.77436 1.01198 0.99447 1.48434 1.06911 1.21414 1.57233 1.22409 0.88505 0.90725 0.98947 1.19628 0.92038 0.92577 0.93752 0.95864 1.21369 0.90855 0.97255 1.46895 0.91047 1.25788 1.01505 0.96467 0.94734 1.70088 1.20380 1.16738 1.48683 0.85502 0.79086 0.79563 0.77496 1.18336 1.20831 1.21278 1.22287 0.90078 1.01968 1.02282 1.21548 0.91283 0.81268 0.75959 1.90558 1.75889 1.33482 1.47723 0.90784 0.91636 0.92867 0.93990 0.93676 0.92014 0.90974 0.91606 0.87838 0.90563 0.89670 0.92878 0.91782 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.19 71.98 0.66 -1.89 16 2 C -0.11 -2.85 3.13 -10.79 -0.03 -2.88 16 3 C -0.15 -3.36 8.87 71.98 0.64 -2.72 16 4 C 0.12 3.52 5.35 86.38 0.46 3.98 16 5 N -0.61 -22.29 2.71 -817.98 -2.21 -24.50 16 6 C 0.12 4.21 6.23 86.83 0.54 4.75 16 7 C 0.04 1.83 2.97 -10.40 -0.03 1.80 16 8 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 9 C -0.53 -26.40 8.40 25.60 0.21 -26.19 16 10 H 0.07 3.40 7.60 -2.91 -0.02 3.37 16 11 C 0.01 0.77 5.37 84.66 0.45 1.23 16 12 N -0.92 -51.64 12.84 21.45 0.28 -51.36 16 13 Si 0.96 41.24 29.54 68.60 2.03 43.27 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 17 C -0.13 -6.06 5.83 30.67 0.18 -5.88 16 18 C 0.51 23.00 8.02 87.90 0.71 23.70 16 19 O -0.59 -29.81 17.59 -3.04 -0.05 -29.87 16 20 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.04 1.23 5.44 -2.39 -0.01 1.22 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.07 2.00 7.93 -2.39 -0.02 1.98 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.66 5.78 -2.39 -0.01 2.65 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.06 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.08 3.88 7.90 -2.39 -0.02 3.86 16 Total: -1.00 -61.42 271.75 4.90 -56.52 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.07 Total: 10.04 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 3.79 Total: -4.11 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -1.94 Total: -75.87 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -61.42 4.90 -56.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238152898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.418 kcal (2) G-P(sol) polarization free energy of solvation -61.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds