Wall clock time and date at job start Mon Mar 30 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46821 * 2 1 4 4 H 1.09006 * 109.29577 * 179.50085 * 3 2 1 5 5 C 1.52913 * 109.30416 * 60.11934 * 3 2 1 6 6 H 1.08998 * 109.60416 * 308.69195 * 5 3 2 7 7 C 1.50701 * 109.60634 * 69.17590 * 5 3 2 8 8 H 1.08000 * 119.99858 * 0.02562 * 7 5 3 9 9 C 1.37876 * 120.00216 * 179.97438 * 7 5 3 10 10 N 1.31515 * 120.00018 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99989 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47082 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47207 * 119.99942 * 11 9 7 14 14 H 1.48495 * 109.46921 * 240.00239 * 11 9 7 15 15 C 1.53346 * 108.67329 * 188.93446 * 5 3 2 16 16 C 1.53070 * 108.42469 * 67.53286 * 15 5 3 17 17 C 1.50175 * 109.88906 * 311.09441 * 16 15 5 18 18 O 1.21276 * 118.24718 * 197.56310 * 17 16 15 19 19 N 1.33353 * 123.50774 * 17.58706 * 17 16 15 20 20 C 1.46504 * 117.94490 * 177.74938 * 19 17 16 21 21 H 1.09001 * 109.46733 * 173.41193 * 1 2 3 22 22 H 1.09005 * 109.47268 * 293.40627 * 1 2 3 23 23 H 1.08995 * 109.47276 * 53.41285 * 1 2 3 24 24 H 1.08997 * 109.47455 * 239.99725 * 2 1 3 25 25 H 1.09001 * 109.47072 * 119.99226 * 2 1 3 26 26 H 0.96999 * 119.99913 * 179.97438 * 10 9 7 27 27 H 1.08994 * 109.67524 * 307.79347 * 15 5 3 28 28 H 1.09007 * 109.70068 * 187.28173 * 15 5 3 29 29 H 1.09001 * 109.39908 * 190.96923 * 16 15 5 30 30 H 1.08999 * 109.40079 * 71.22597 * 16 15 5 31 31 H 1.08996 * 109.47342 * 275.22910 * 20 19 17 32 32 H 1.08993 * 109.46749 * 35.23436 * 20 19 17 33 33 H 1.09005 * 109.46395 * 155.22831 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4393 0.0090 5 6 1.5305 2.1588 1.2513 6 1 0.4520 2.0257 1.3353 7 6 2.2097 1.5908 2.4708 8 1 2.9343 0.7969 2.3649 9 6 1.9069 2.0853 3.7217 10 7 1.0249 3.0523 3.8507 11 14 2.7493 1.3817 5.2333 12 1 3.6926 0.3114 4.8211 13 1 3.4975 2.4591 5.9295 14 1 1.7280 0.8158 6.1507 15 6 1.8568 3.6521 1.1293 16 6 1.0131 4.2406 -0.0042 17 6 1.1276 3.3772 -1.2276 18 8 0.7995 3.8488 -2.2957 19 7 1.5702 2.1195 -1.2022 20 6 1.5846 1.3713 -2.4617 21 1 -0.3633 -1.0209 -0.1179 22 1 -0.3634 0.4083 0.9431 23 1 -0.3633 0.6125 -0.8251 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 0.8116 3.4000 4.7308 27 1 2.9154 3.7792 0.9030 28 1 1.6184 4.1580 2.0650 29 1 1.3676 5.2451 -0.2355 30 1 -0.0300 4.2892 0.3085 31 1 0.6030 0.9296 -2.6331 32 1 1.8278 2.0461 -3.2823 33 1 2.3339 0.5815 -2.4064 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259552878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:17 Heat of formation + Delta-G solvation = -50.018454 kcal Electronic energy + Delta-G solvation = -15004.734729 eV Core-core repulsion = 12643.845657 eV Total energy + Delta-G solvation = -2360.889072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.91911 -36.64641 -34.02427 -32.13068 -31.69381 -28.23876 -26.51681 -24.98889 -23.60042 -20.97578 -20.55738 -17.50283 -16.70725 -15.83031 -15.34488 -15.03250 -14.48894 -13.91883 -13.35014 -13.29044 -12.60737 -12.52690 -12.10786 -11.94684 -11.40765 -11.30968 -10.99788 -10.93677 -10.76227 -10.63112 -10.38220 -10.16446 -9.78132 -9.52874 -9.00134 -8.76071 -8.42771 -8.00574 -6.11687 -4.18408 3.22964 3.32185 3.33256 3.34415 3.74699 4.34995 5.18844 5.35180 5.49330 5.63148 5.73366 5.84766 5.86495 6.04460 6.12056 6.15238 6.22821 6.32924 6.47393 6.49893 6.58501 6.79882 6.85021 6.98736 7.05407 7.29624 7.58914 7.79908 7.89981 8.08966 8.32823 8.81625 8.87459 9.46853 10.94654 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.011220 C = 0.009534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.731916 B = 2494.907016 C = 2936.073089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.143 3.857 4 H 0.062 0.938 5 C 0.043 3.957 6 H 0.043 0.957 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.519 3.481 18 O -0.586 6.586 19 N -0.596 5.596 20 C 0.080 3.920 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.261 0.739 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -3.675 -5.085 6.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.041 3.959 4 H 0.080 0.920 5 C 0.024 3.976 6 H 0.061 0.939 7 C -0.549 4.549 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.157 4.157 16 C -0.173 4.173 17 C 0.309 3.691 18 O -0.468 6.468 19 N -0.327 5.327 20 C -0.064 4.064 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.837 -3.330 -5.465 6.454 hybrid contribution 0.446 -0.395 0.926 1.101 sum 1.283 -3.724 -4.539 6.010 Atomic orbital electron populations 1.21772 0.96076 1.00041 1.02597 1.21783 0.96513 0.96248 1.01514 1.21393 0.97577 0.92173 0.84793 0.92016 1.19060 0.97837 0.90926 0.89770 0.93923 1.21022 1.24036 1.19411 0.90383 0.92237 1.24926 0.94990 0.94907 0.98928 1.69873 1.32710 1.26447 1.23473 0.86538 0.79437 0.79043 0.83008 1.19745 1.21033 1.21046 1.21817 0.96441 0.99570 0.97833 1.21703 1.03428 0.98139 0.94000 1.20469 0.75691 0.81845 0.91082 1.90596 1.51467 1.72780 1.31935 1.47476 1.63059 1.12615 1.09560 1.21574 1.01034 0.96352 0.87391 0.94020 0.91325 0.93495 0.93431 0.89914 0.92857 0.94259 0.87815 0.90203 0.89221 0.93276 0.91512 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.24 37.16 0.34 -2.16 16 2 C -0.12 -2.09 5.11 -26.73 -0.14 -2.23 16 3 C 0.14 2.76 2.36 -68.38 -0.16 2.60 16 4 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 5 C 0.04 0.96 1.45 -91.64 -0.13 0.83 16 6 H 0.04 1.05 6.13 -51.93 -0.32 0.73 16 7 C -0.51 -12.56 7.87 -34.44 -0.27 -12.83 16 8 H 0.06 1.44 7.35 -52.49 -0.39 1.05 16 9 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 10 N -0.89 -23.50 11.37 55.43 0.63 -22.87 16 11 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C -0.12 -2.62 5.18 -26.52 -0.14 -2.76 16 16 C -0.13 -2.69 6.03 -28.10 -0.17 -2.85 16 17 C 0.52 10.88 7.47 -11.87 -0.09 10.79 16 18 O -0.59 -13.49 16.26 5.56 0.09 -13.40 16 19 N -0.60 -11.31 2.44 -175.17 -0.43 -11.74 16 20 C 0.08 1.27 8.73 59.85 0.52 1.79 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.31 6.60 -51.93 -0.34 0.97 16 23 H 0.05 0.80 6.20 -51.93 -0.32 0.48 16 24 H 0.05 0.70 6.49 -51.93 -0.34 0.36 16 25 H 0.08 1.47 7.24 -51.93 -0.38 1.09 16 26 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.10 2.54 6.03 -51.92 -0.31 2.23 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 31 H 0.05 0.75 7.18 -51.93 -0.37 0.38 16 32 H 0.07 1.09 7.31 -51.93 -0.38 0.71 16 33 H 0.07 0.89 6.79 -51.93 -0.35 0.54 16 LS Contribution 255.95 15.07 3.86 3.86 Total: -1.00 -27.45 255.95 -5.94 -33.39 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.75 Total: 1.12 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.33 Total: -5.27 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.20 Total: -34.61 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.45 -5.94 -33.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.628 kcal (2) G-P(sol) polarization free energy of solvation -27.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds