Wall clock time and date at job start Mon Mar 30 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00012 * 2 1 4 4 O 1.21286 * 119.99997 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.52998 * 117.49988 * 248.62029 * 5 3 2 7 7 C 1.52997 * 60.00405 * 252.51285 * 6 5 3 8 8 C 1.46507 * 119.99612 * 179.97438 * 2 1 3 9 9 C 1.52993 * 109.47551 * 355.27460 * 8 2 1 10 10 C 1.53002 * 109.46844 * 115.27481 * 8 2 1 11 11 C 1.50698 * 109.46959 * 235.27334 * 8 2 1 12 12 H 1.08001 * 120.00218 * 359.95760 * 11 8 2 13 13 C 1.37883 * 120.00073 * 179.97438 * 11 8 2 14 14 N 1.31515 * 119.99619 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00156 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47292 * 89.99561 * 15 13 11 17 17 H 1.48501 * 109.47150 * 209.99548 * 15 13 11 18 18 H 1.48498 * 109.46827 * 329.99553 * 15 13 11 19 19 H 1.09000 * 109.46994 * 264.72404 * 1 2 3 20 20 H 1.08993 * 109.47003 * 24.71880 * 1 2 3 21 21 H 1.08998 * 109.47492 * 144.72583 * 1 2 3 22 22 H 1.08999 * 115.54937 * 34.32974 * 5 3 2 23 23 H 1.09005 * 117.49519 * 0.02562 * 6 5 3 24 24 H 1.08997 * 117.50076 * 145.01813 * 6 5 3 25 25 H 1.09000 * 117.49550 * 252.51461 * 7 6 5 26 26 H 1.08996 * 117.51796 * 107.47620 * 7 6 5 27 27 H 1.09004 * 109.47214 * 59.99687 * 9 8 2 28 28 H 1.08999 * 109.47498 * 179.97438 * 9 8 2 29 29 H 1.08999 * 109.47014 * 300.00085 * 9 8 2 30 30 H 1.09007 * 109.47171 * 59.99564 * 10 8 2 31 31 H 1.09000 * 109.46772 * 179.97438 * 10 8 2 32 32 H 1.08994 * 109.47330 * 300.00102 * 10 8 2 33 33 H 0.96999 * 119.99894 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 0.0006 6 6 1.4602 3.3317 -1.2630 7 6 2.2076 3.7626 0.0005 8 6 2.1975 -1.2688 0.0006 9 6 1.2075 -2.4292 0.1199 10 6 2.9858 -1.4031 -1.3038 11 6 3.1496 -1.2987 1.1683 12 1 3.2042 -0.4565 1.8422 13 6 3.9512 -2.4011 1.3762 14 7 3.8846 -3.4267 0.5557 15 14 5.1309 -2.4384 2.8241 16 1 4.4465 -3.0228 4.0053 17 1 6.3139 -3.2665 2.4776 18 1 5.5701 -1.0556 3.1404 19 1 -0.3633 -0.0945 1.0233 20 1 -0.3633 0.9334 -0.4297 21 1 -0.3634 -0.8389 -0.5934 22 1 0.4473 2.4732 0.5555 23 1 2.0540 2.9529 -2.0949 24 1 0.5710 3.8982 -1.5397 25 1 1.8101 4.6126 0.5551 26 1 3.2934 3.6675 0.0005 27 1 0.5188 -2.4076 -0.7247 28 1 1.7524 -3.3732 0.1199 29 1 0.6459 -2.3335 1.0491 30 1 3.6911 -0.5764 -1.3889 31 1 3.5311 -2.3469 -1.3032 32 1 2.2972 -1.3815 -2.1484 33 1 4.4483 -4.2024 0.7021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659689.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:40 Heat of formation + Delta-G solvation = -21.151799 kcal Electronic energy + Delta-G solvation = -14881.666122 eV Core-core repulsion = 12522.028802 eV Total energy + Delta-G solvation = -2359.637320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95736 -38.04054 -36.50671 -34.88492 -32.04450 -28.59421 -27.34463 -26.34125 -25.38616 -23.26512 -21.43898 -19.64982 -18.59451 -17.50719 -17.20786 -16.11581 -16.04906 -15.43808 -15.09834 -14.50557 -13.93838 -13.51198 -13.35437 -13.27920 -13.01912 -12.83277 -12.67745 -12.48305 -12.35932 -12.31006 -12.03711 -11.75417 -11.41564 -11.27443 -11.10414 -10.49019 -10.17611 -9.15178 -8.05018 -6.15109 1.34434 1.37386 1.47769 1.85281 2.38031 2.54912 3.05635 3.18003 3.80520 3.93629 4.08686 4.31546 4.51407 4.69775 4.75751 4.76425 4.83441 4.85927 4.93098 4.98754 5.07147 5.09123 5.25430 5.28771 5.50299 5.63184 5.75502 5.96762 6.26212 6.34929 6.79566 7.04070 7.44612 7.72380 8.94485 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.011307 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.006292 B = 2475.839758 C = 2882.762409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.517 3.483 4 O -0.584 6.584 5 C -0.201 4.201 6 C -0.134 4.134 7 C -0.155 4.155 8 C 0.282 3.718 9 C -0.127 4.127 10 C -0.131 4.131 11 C -0.501 4.501 12 H 0.028 0.972 13 C 0.019 3.981 14 N -0.907 5.907 15 Si 0.946 3.054 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.290 1.290 19 H 0.054 0.946 20 H 0.094 0.906 21 H 0.075 0.925 22 H 0.147 0.853 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.132 0.868 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 8.985 -2.285 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.337 5.337 3 C 0.306 3.694 4 O -0.464 6.464 5 C -0.222 4.222 6 C -0.171 4.171 7 C -0.192 4.192 8 C 0.199 3.801 9 C -0.185 4.185 10 C -0.190 4.190 11 C -0.540 4.540 12 H 0.047 0.953 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.773 3.227 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.216 1.216 19 H 0.072 0.928 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.164 0.836 23 H 0.097 0.903 24 H 0.159 0.841 25 H 0.150 0.850 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.218 8.754 -2.305 12.919 hybrid contribution 1.086 -0.391 0.838 1.426 sum -8.132 8.362 -1.467 11.756 Atomic orbital electron populations 1.21961 0.78933 1.04030 1.02052 1.48323 1.07666 1.06247 1.71463 1.20346 0.87317 0.85707 0.76038 1.90632 1.16342 1.87863 1.51576 1.22339 1.03107 0.89472 1.07316 1.22981 1.03638 1.00359 0.90137 1.22964 0.98597 0.95977 1.01670 1.18084 0.89357 0.79916 0.92786 1.21883 0.97391 1.00671 0.98524 1.21913 0.99283 1.01465 0.96339 1.21312 1.21549 1.00635 1.10475 0.95333 1.25391 0.98212 0.95505 0.98786 1.69871 1.40735 1.06486 1.37659 0.85744 0.79284 0.77036 0.80623 1.19459 1.20471 1.21591 0.92778 0.88751 0.90607 0.83576 0.90346 0.84116 0.85043 0.90756 0.93542 0.91009 0.94373 0.96448 0.91305 0.95599 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.17 9.16 127.77 1.17 3.34 16 2 N -0.61 -25.94 2.82 -803.42 -2.26 -28.20 16 3 C 0.52 22.71 6.71 87.66 0.59 23.29 16 4 O -0.58 -31.93 13.33 -3.05 -0.04 -31.97 16 5 C -0.20 -6.03 4.79 -11.54 -0.06 -6.09 16 6 C -0.13 -3.17 10.23 30.59 0.31 -2.86 16 7 C -0.15 -4.15 10.04 30.60 0.31 -3.84 16 8 C 0.28 14.29 0.77 2.85 0.00 14.29 16 9 C -0.13 -5.76 7.16 71.98 0.52 -5.25 16 10 C -0.13 -6.90 8.25 71.98 0.59 -6.30 16 11 C -0.50 -29.23 6.91 25.60 0.18 -29.05 16 12 H 0.03 1.79 7.13 -2.91 -0.02 1.77 16 13 C 0.02 1.11 5.15 84.66 0.44 1.55 16 14 N -0.91 -51.68 9.35 21.45 0.20 -51.48 16 15 Si 0.95 46.80 29.54 68.60 2.03 48.82 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.09 2.13 6.35 -2.39 -0.02 2.11 16 21 H 0.08 2.14 6.08 -2.39 -0.01 2.12 16 22 H 0.15 3.42 7.16 -2.39 -0.02 3.41 16 23 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.07 2.48 7.67 -2.39 -0.02 2.46 16 27 H 0.05 1.79 6.71 -2.38 -0.02 1.77 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 29 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 30 H 0.02 0.95 6.52 -2.38 -0.02 0.94 16 31 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -71.01 262.19 5.06 -65.95 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.09 Total: 7.81 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.05 Total: -10.93 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.06 Total: -79.68 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.04 Total: -31.97 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -71.01 5.06 -65.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659689.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.801 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds