Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.50703 * 109.47292 * 239.99759 * 2 1 3 5 5 H 1.07994 * 119.99399 * 240.00067 * 4 2 1 6 6 C 1.37874 * 119.99789 * 59.99693 * 4 2 1 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46762 * 60.00562 * 8 6 4 10 10 H 1.48506 * 109.46725 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47116 * 300.00217 * 8 6 4 12 12 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 13 13 C 1.34774 * 120.00072 * 300.00165 * 12 2 1 14 14 O 1.21284 * 120.00066 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99838 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.47353 * 180.02562 * 15 13 12 17 17 C 1.52998 * 117.49540 * 243.62143 * 16 15 13 18 18 C 1.52995 * 117.49815 * 174.99941 * 16 15 13 19 19 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 20 20 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 21 21 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 24 24 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 25 25 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99251 * 120.00465 * 12 2 1 27 27 H 1.09004 * 109.47043 * 299.99952 * 15 13 12 28 28 H 1.09001 * 109.47324 * 59.99585 * 15 13 12 29 29 H 1.09001 * 115.54850 * 29.32494 * 16 15 13 30 30 H 1.08996 * 117.50211 * 359.97438 * 17 16 15 31 31 H 1.09001 * 117.49379 * 145.01626 * 17 16 15 32 32 H 1.09003 * 117.49619 * 214.97098 * 18 16 15 33 33 H 1.08996 * 117.50061 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0184 -0.6905 1.1963 13 6 1.6927 -0.2300 2.4203 14 8 0.9951 0.7558 2.5315 15 6 2.1955 -0.9400 3.6508 16 6 1.6849 -0.2192 4.9001 17 6 2.7259 0.4146 5.8250 18 6 1.9906 -0.8555 6.2574 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8899 25 1 0.7095 1.1616 -3.4844 26 1 2.5761 -1.4792 1.1072 27 1 1.8326 -1.9678 3.6510 28 1 3.2855 -0.9396 3.6506 29 1 0.7304 0.2952 4.7889 30 1 3.7745 0.3177 5.5438 31 1 2.4563 1.3463 6.3224 32 1 1.2373 -0.7594 7.0394 33 1 2.5551 -1.7879 6.2604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259720973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = -22.828164 kcal Electronic energy + Delta-G solvation = -14300.079474 eV Core-core repulsion = 11940.369461 eV Total energy + Delta-G solvation = -2359.710013 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.16391 -37.01916 -35.10809 -32.37115 -30.33733 -28.10094 -25.51071 -25.25783 -22.30385 -21.54143 -19.86119 -18.55021 -17.23334 -15.74373 -15.21700 -15.01667 -14.49367 -13.92212 -13.66253 -12.87999 -12.32369 -12.26430 -11.80430 -11.45379 -11.34349 -11.20472 -11.00647 -11.00482 -10.46062 -10.26087 -10.23129 -10.13404 -9.83601 -9.69189 -9.06904 -8.49303 -8.42297 -7.79105 -6.05714 -4.18276 3.26248 3.31687 3.32768 3.52078 3.89481 4.18965 4.42160 4.88702 5.05162 5.12353 5.21571 5.45859 5.65790 5.71539 5.85904 5.91195 6.04640 6.16916 6.50169 6.79770 6.98593 7.07997 7.33185 7.37459 7.65334 7.68290 7.69855 7.87216 8.08099 8.32632 8.73574 8.89429 9.26064 9.50915 10.95569 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.066109 B = 0.007021 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.441735 B = 3987.196906 C = 4148.758148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.291 3.709 3 C -0.146 4.146 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.711 5.711 13 C 0.503 3.497 14 O -0.548 6.548 15 C -0.115 4.115 16 C -0.131 4.131 17 C -0.180 4.180 18 C -0.186 4.186 19 H 0.035 0.965 20 H 0.086 0.914 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.086 0.914 24 H 0.035 0.965 25 H 0.263 0.737 26 H 0.387 0.613 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -3.896 10.478 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.208 3.792 3 C -0.204 4.204 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.359 5.359 13 C 0.288 3.712 14 O -0.428 6.428 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.217 4.217 18 C -0.223 4.223 19 H 0.054 0.946 20 H 0.105 0.895 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.105 0.895 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.219 0.781 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.513 -3.056 10.360 11.090 hybrid contribution 0.703 -0.933 -0.915 1.484 sum 3.216 -3.989 9.445 10.746 Atomic orbital electron populations 1.22070 0.97503 0.98989 1.01882 1.18101 0.91221 0.89670 0.80219 1.22069 0.97921 0.98569 1.01887 1.21110 1.32534 1.12586 0.90228 0.92344 1.24822 0.94765 0.94933 0.98873 1.69837 1.35894 1.22351 1.23638 0.86527 0.79089 0.79620 0.81941 1.20258 1.21152 1.20269 1.46649 1.51850 1.31004 1.06370 1.20331 0.81062 0.85012 0.84789 1.90586 1.38702 1.26707 1.86759 1.21276 1.01530 0.99986 0.92713 1.22063 1.01096 1.02548 0.89225 1.22991 0.97590 0.96804 1.04334 1.22977 1.03827 0.97097 0.98439 0.94630 0.89529 0.96075 0.96094 0.89536 0.94610 0.92644 0.78111 0.89313 0.89661 0.86436 0.89046 0.89028 0.89038 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.18 37.16 0.30 -3.47 16 2 C 0.29 7.31 0.78 -132.96 -0.10 7.20 16 3 C -0.15 -3.78 8.18 37.16 0.30 -3.47 16 4 C -0.53 -13.83 8.18 -34.44 -0.28 -14.11 16 5 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.18 9.35 55.43 0.52 -23.66 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.71 -14.96 5.10 -48.68 -0.25 -15.20 16 13 C 0.50 10.02 7.25 -10.99 -0.08 9.94 16 14 O -0.55 -12.86 11.77 5.55 0.07 -12.80 16 15 C -0.11 -1.67 5.98 -27.88 -0.17 -1.84 16 16 C -0.13 -1.84 5.41 -90.62 -0.49 -2.33 16 17 C -0.18 -2.18 10.18 -26.73 -0.27 -2.46 16 18 C -0.19 -2.06 10.25 -26.73 -0.27 -2.33 16 19 H 0.03 0.91 6.17 -51.93 -0.32 0.59 16 20 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 24 H 0.03 0.92 6.17 -51.93 -0.32 0.60 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 29 H 0.12 1.91 7.31 -51.93 -0.38 1.53 16 30 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -29.31 267.38 -6.69 -36.00 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.89 Total: 7.26 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.15 Total: -11.13 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.27 Total: -38.87 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.31 -6.69 -36.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.174 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds