Wall clock time and date at job start Mon Mar 30 2020 02:58:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46903 * 2 1
4 4 H 1.09001 * 109.60527 * 302.94098 * 3 2 1
5 5 N 1.47187 * 109.60879 * 63.27090 * 3 2 1
6 6 C 1.33370 * 120.43868 * 191.72549 * 5 3 2
7 7 O 1.21280 * 119.90063 * 179.69701 * 6 5 3
8 8 C 1.51427 * 120.20918 * 359.69957 * 6 5 3
9 9 C 1.53063 * 108.49129 * 288.78290 * 8 6 5
10 10 C 1.51791 * 110.74880 * 84.92042 * 9 8 6
11 11 C 1.51774 * 113.81347 * 293.18656 * 10 9 8
12 12 H 1.08996 * 109.19519 * 306.63416 * 11 10 9
13 13 C 1.50705 * 109.16075 * 187.33377 * 11 10 9
14 14 H 1.08003 * 119.99293 * 298.49897 * 13 11 10
15 15 C 1.37872 * 120.00365 * 118.49596 * 13 11 10
16 16 N 1.31516 * 119.99883 * 6.74039 * 15 13 11
17 17 Si 1.86799 * 120.00146 * 186.73292 * 15 13 11
18 18 H 1.48500 * 109.46954 * 84.96064 * 17 15 13
19 19 H 1.48497 * 109.47368 * 204.96336 * 17 15 13
20 20 H 1.48503 * 109.46923 * 324.96660 * 17 15 13
21 21 H 1.09005 * 109.47134 * 180.02562 * 1 2 3
22 22 H 1.09005 * 109.46904 * 299.99699 * 1 2 3
23 23 H 1.08995 * 109.47520 * 60.00090 * 1 2 3
24 24 H 1.08995 * 109.46778 * 239.99758 * 2 1 3
25 25 H 1.08998 * 109.46631 * 119.99850 * 2 1 3
26 26 H 0.97005 * 119.77892 * 11.44839 * 5 3 2
27 27 H 1.08994 * 109.63796 * 169.08099 * 8 6 5
28 28 H 1.09005 * 109.80285 * 48.57521 * 8 6 5
29 29 H 1.08997 * 109.21760 * 324.59294 * 9 8 6
30 30 H 1.08994 * 109.22061 * 205.25024 * 9 8 6
31 31 H 1.09002 * 108.61509 * 172.06464 * 10 9 8
32 32 H 1.08999 * 108.61333 * 54.30902 * 10 9 8
33 33 H 0.96994 * 119.99675 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6355 1.9734 -0.8617
5 7 1.6167 2.1160 1.2384
6 6 1.7393 3.4381 1.3643
7 8 1.3822 3.9837 2.3869
8 6 2.3228 4.2602 0.2344
9 6 3.8228 3.9684 0.1462
10 6 4.0812 2.7289 -0.6910
11 6 3.5686 1.4465 -0.0617
12 1 3.9683 1.3584 0.9486
13 6 4.0346 0.2719 -0.8828
14 1 3.7271 0.1780 -1.9139
15 6 4.8534 -0.6828 -0.3179
16 7 5.1204 -0.6418 0.9692
17 14 5.5833 -2.0345 -1.3806
18 1 6.8320 -1.5438 -2.0171
19 1 5.8897 -3.2170 -0.5363
20 1 4.6084 -2.4172 -2.4335
21 1 -0.3634 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8901
23 1 -0.3634 0.5138 -0.8899
24 1 1.8933 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 1.2423 1.5954 1.9662
27 1 2.1671 5.3203 0.4343
28 1 1.8414 3.9902 -0.7056
29 1 4.2175 3.8121 1.1501
30 1 4.3279 4.8205 -0.3086
31 1 5.1555 2.6337 -0.8493
32 1 3.5999 2.8574 -1.6605
33 1 5.6961 -1.3136 1.3666
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259785733.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:06
Heat of formation + Delta-G solvation = -83.744645 kcal
Electronic energy + Delta-G solvation = -14867.964877 eV
Core-core repulsion = 12505.613327 eV
Total energy + Delta-G solvation = -2362.351549 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 211.131 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.12856 -38.26176 -35.40323 -34.74312 -32.88410 -31.23011 -27.67877 -26.51178
-24.42921 -22.21459 -21.13282 -20.43899 -18.60337 -17.83538 -17.16896 -16.59684
-15.76174 -15.29116 -14.92157 -14.59566 -14.39505 -14.24367 -13.96504 -13.44434
-12.97391 -12.79629 -12.76558 -12.51191 -12.11125 -12.00650 -11.94850 -11.54027
-11.26095 -10.89762 -10.88191 -10.65696 -10.54671 -9.71322 -8.07584 -6.11835
1.44308 1.47735 1.54320 1.77063 2.44512 2.61747 3.24716 3.72177
4.03684 4.17042 4.21965 4.44326 4.46614 4.57127 4.77364 4.83666
4.90795 4.96656 5.02408 5.16888 5.32532 5.35082 5.41558 5.48406
5.71376 5.75959 5.87986 5.94351 6.01928 6.35909 6.60293 7.05300
7.37499 7.51403 9.01356
Molecular weight = 211.13amu
Principal moments of inertia in cm(-1)
A = 0.033194 B = 0.011386 C = 0.009695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.319903 B = 2458.494014 C = 2887.451364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.103 4.103
3 C 0.153 3.847
4 H 0.083 0.917
5 N -0.704 5.704
6 C 0.509 3.491
7 O -0.619 6.619
8 C -0.126 4.126
9 C -0.106 4.106
10 C -0.106 4.106
11 C 0.009 3.991
12 H 0.032 0.968
13 C -0.503 4.503
14 H 0.062 0.938
15 C 0.019 3.981
16 N -0.927 5.927
17 Si 0.941 3.059
18 H -0.280 1.280
19 H -0.295 1.295
20 H -0.261 1.261
21 H 0.059 0.941
22 H 0.046 0.954
23 H 0.062 0.938
24 H 0.081 0.919
25 H 0.037 0.963
26 H 0.390 0.610
27 H 0.103 0.897
28 H 0.108 0.892
29 H 0.033 0.967
30 H 0.092 0.908
31 H 0.037 0.963
32 H 0.063 0.937
33 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.748 3.702 -5.645 8.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.141 4.141
3 C 0.050 3.950
4 H 0.100 0.900
5 N -0.352 5.352
6 C 0.298 3.702
7 O -0.504 6.504
8 C -0.166 4.166
9 C -0.144 4.144
10 C -0.143 4.143
11 C -0.011 4.011
12 H 0.050 0.950
13 C -0.542 4.542
14 H 0.080 0.920
15 C -0.179 4.179
16 N -0.567 5.567
17 Si 0.768 3.232
18 H -0.206 1.206
19 H -0.222 1.222
20 H -0.185 1.185
21 H 0.078 0.922
22 H 0.066 0.934
23 H 0.082 0.918
24 H 0.100 0.900
25 H 0.056 0.944
26 H 0.225 0.775
27 H 0.122 0.878
28 H 0.127 0.873
29 H 0.052 0.948
30 H 0.110 0.890
31 H 0.056 0.944
32 H 0.082 0.918
33 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -5.740 3.965 -5.195 8.698
hybrid contribution 0.732 -1.280 0.282 1.501
sum -5.008 2.685 -4.913 7.512
Atomic orbital electron populations
1.21833 0.95153 1.01758 1.01661 1.21492 0.94706 0.95169 1.02764
1.21670 0.96147 0.92873 0.84322 0.89952 1.46362 1.61961 1.07291
1.19630 1.21097 0.76753 0.83288 0.89099 1.90641 1.54053 1.72468
1.33209 1.21956 0.96956 1.00246 0.97436 1.21241 0.93923 0.99309
0.99886 1.21275 1.00316 0.93877 0.98879 1.19172 0.91167 0.92924
0.97815 0.94952 1.21202 1.28758 1.06620 0.97580 0.92004 1.25589
0.97071 0.99846 0.95439 1.70054 1.38359 1.36496 1.11790 0.85823
0.79250 0.78986 0.79119 1.20640 1.22157 1.18499 0.92218 0.93449
0.91847 0.90047 0.94436 0.77463 0.87827 0.87340 0.94814 0.88987
0.94445 0.91786 0.93377
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.10 9.78 71.98 0.70 -3.39 16
2 C -0.10 -3.73 4.75 30.59 0.15 -3.59 16
3 C 0.15 5.61 2.13 44.85 0.10 5.70 16
4 H 0.08 2.66 6.73 -2.39 -0.02 2.64 16
5 N -0.70 -25.97 4.66 -442.20 -2.06 -28.03 16
6 C 0.51 19.31 7.06 88.11 0.62 19.93 16
7 O -0.62 -27.76 17.92 -3.03 -0.05 -27.81 16
8 C -0.13 -3.77 5.57 30.10 0.17 -3.60 16
9 C -0.11 -3.42 5.67 30.22 0.17 -3.25 16
10 C -0.11 -3.95 4.54 29.79 0.14 -3.81 16
11 C 0.01 0.39 2.15 -11.95 -0.03 0.37 16
12 H 0.03 1.72 6.81 -2.39 -0.02 1.70 16
13 C -0.50 -24.11 5.86 25.60 0.15 -23.96 16
14 H 0.06 2.85 7.76 -2.91 -0.02 2.83 16
15 C 0.02 0.97 5.45 84.65 0.46 1.43 16
16 N -0.93 -51.84 12.62 21.45 0.27 -51.57 16
17 Si 0.94 40.90 29.54 68.60 2.03 42.92 16
18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16
19 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16
20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
21 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
22 H 0.05 1.29 7.34 -2.38 -0.02 1.28 16
23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
24 H 0.08 3.13 6.61 -2.39 -0.02 3.11 16
25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
26 H 0.39 14.37 8.07 -92.70 -0.75 13.62 16
27 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16
28 H 0.11 2.74 6.79 -2.38 -0.02 2.73 16
29 H 0.03 1.26 7.86 -2.39 -0.02 1.25 16
30 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
31 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16
32 H 0.06 2.10 7.89 -2.39 -0.02 2.09 16
33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16
Total: -1.00 -59.95 261.97 3.15 -56.80
By element:
Atomic # 1 Polarization: 21.53 SS G_CDS: 0.34 Total: 21.88 kcal
Atomic # 6 Polarization: -16.81 SS G_CDS: 2.63 Total: -14.18 kcal
Atomic # 7 Polarization: -77.81 SS G_CDS: -1.79 Total: -79.60 kcal
Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal
Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal
Total: -59.95 3.15 -56.80 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259785733.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.949 kcal
(2) G-P(sol) polarization free energy of solvation -59.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.897 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.745 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds