Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46903 * 2 1 4 4 H 1.09001 * 109.60527 * 302.94098 * 3 2 1 5 5 N 1.47187 * 109.60879 * 63.27090 * 3 2 1 6 6 C 1.33370 * 120.43868 * 191.72549 * 5 3 2 7 7 O 1.21280 * 119.90063 * 179.69701 * 6 5 3 8 8 C 1.51427 * 120.20918 * 359.69957 * 6 5 3 9 9 C 1.53063 * 108.49129 * 288.78290 * 8 6 5 10 10 C 1.51791 * 110.74880 * 84.92042 * 9 8 6 11 11 C 1.51774 * 113.81347 * 293.18656 * 10 9 8 12 12 H 1.08996 * 109.19519 * 306.63416 * 11 10 9 13 13 C 1.50705 * 109.16075 * 187.33377 * 11 10 9 14 14 H 1.08003 * 119.99293 * 298.49897 * 13 11 10 15 15 C 1.37872 * 120.00365 * 118.49596 * 13 11 10 16 16 N 1.31516 * 119.99883 * 6.74039 * 15 13 11 17 17 Si 1.86799 * 120.00146 * 186.73292 * 15 13 11 18 18 H 1.48500 * 109.46954 * 84.96064 * 17 15 13 19 19 H 1.48497 * 109.47368 * 204.96336 * 17 15 13 20 20 H 1.48503 * 109.46923 * 324.96660 * 17 15 13 21 21 H 1.09005 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46904 * 299.99699 * 1 2 3 23 23 H 1.08995 * 109.47520 * 60.00090 * 1 2 3 24 24 H 1.08995 * 109.46778 * 239.99758 * 2 1 3 25 25 H 1.08998 * 109.46631 * 119.99850 * 2 1 3 26 26 H 0.97005 * 119.77892 * 11.44839 * 5 3 2 27 27 H 1.08994 * 109.63796 * 169.08099 * 8 6 5 28 28 H 1.09005 * 109.80285 * 48.57521 * 8 6 5 29 29 H 1.08997 * 109.21760 * 324.59294 * 9 8 6 30 30 H 1.08994 * 109.22061 * 205.25024 * 9 8 6 31 31 H 1.09002 * 108.61509 * 172.06464 * 10 9 8 32 32 H 1.08999 * 108.61333 * 54.30902 * 10 9 8 33 33 H 0.96994 * 119.99675 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9734 -0.8617 5 7 1.6167 2.1160 1.2384 6 6 1.7393 3.4381 1.3643 7 8 1.3822 3.9837 2.3869 8 6 2.3228 4.2602 0.2344 9 6 3.8228 3.9684 0.1462 10 6 4.0812 2.7289 -0.6910 11 6 3.5686 1.4465 -0.0617 12 1 3.9683 1.3584 0.9486 13 6 4.0346 0.2719 -0.8828 14 1 3.7271 0.1780 -1.9139 15 6 4.8534 -0.6828 -0.3179 16 7 5.1204 -0.6418 0.9692 17 14 5.5833 -2.0345 -1.3806 18 1 6.8320 -1.5438 -2.0171 19 1 5.8897 -3.2170 -0.5363 20 1 4.6084 -2.4172 -2.4335 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.2423 1.5954 1.9662 27 1 2.1671 5.3203 0.4343 28 1 1.8414 3.9902 -0.7056 29 1 4.2175 3.8121 1.1501 30 1 4.3279 4.8205 -0.3086 31 1 5.1555 2.6337 -0.8493 32 1 3.5999 2.8574 -1.6605 33 1 5.6961 -1.3136 1.3666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -83.744645 kcal Electronic energy + Delta-G solvation = -14867.964877 eV Core-core repulsion = 12505.613327 eV Total energy + Delta-G solvation = -2362.351549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12856 -38.26176 -35.40323 -34.74312 -32.88410 -31.23011 -27.67877 -26.51178 -24.42921 -22.21459 -21.13282 -20.43899 -18.60337 -17.83538 -17.16896 -16.59684 -15.76174 -15.29116 -14.92157 -14.59566 -14.39505 -14.24367 -13.96504 -13.44434 -12.97391 -12.79629 -12.76558 -12.51191 -12.11125 -12.00650 -11.94850 -11.54027 -11.26095 -10.89762 -10.88191 -10.65696 -10.54671 -9.71322 -8.07584 -6.11835 1.44308 1.47735 1.54320 1.77063 2.44512 2.61747 3.24716 3.72177 4.03684 4.17042 4.21965 4.44326 4.46614 4.57127 4.77364 4.83666 4.90795 4.96656 5.02408 5.16888 5.32532 5.35082 5.41558 5.48406 5.71376 5.75959 5.87986 5.94351 6.01928 6.35909 6.60293 7.05300 7.37499 7.51403 9.01356 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.011386 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.319903 B = 2458.494014 C = 2887.451364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.153 3.847 4 H 0.083 0.917 5 N -0.704 5.704 6 C 0.509 3.491 7 O -0.619 6.619 8 C -0.126 4.126 9 C -0.106 4.106 10 C -0.106 4.106 11 C 0.009 3.991 12 H 0.032 0.968 13 C -0.503 4.503 14 H 0.062 0.938 15 C 0.019 3.981 16 N -0.927 5.927 17 Si 0.941 3.059 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.261 1.261 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.390 0.610 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 3.702 -5.645 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C 0.050 3.950 4 H 0.100 0.900 5 N -0.352 5.352 6 C 0.298 3.702 7 O -0.504 6.504 8 C -0.166 4.166 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.011 4.011 12 H 0.050 0.950 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.179 4.179 16 N -0.567 5.567 17 Si 0.768 3.232 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.185 1.185 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.225 0.775 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.740 3.965 -5.195 8.698 hybrid contribution 0.732 -1.280 0.282 1.501 sum -5.008 2.685 -4.913 7.512 Atomic orbital electron populations 1.21833 0.95153 1.01758 1.01661 1.21492 0.94706 0.95169 1.02764 1.21670 0.96147 0.92873 0.84322 0.89952 1.46362 1.61961 1.07291 1.19630 1.21097 0.76753 0.83288 0.89099 1.90641 1.54053 1.72468 1.33209 1.21956 0.96956 1.00246 0.97436 1.21241 0.93923 0.99309 0.99886 1.21275 1.00316 0.93877 0.98879 1.19172 0.91167 0.92924 0.97815 0.94952 1.21202 1.28758 1.06620 0.97580 0.92004 1.25589 0.97071 0.99846 0.95439 1.70054 1.38359 1.36496 1.11790 0.85823 0.79250 0.78986 0.79119 1.20640 1.22157 1.18499 0.92218 0.93449 0.91847 0.90047 0.94436 0.77463 0.87827 0.87340 0.94814 0.88987 0.94445 0.91786 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.78 71.98 0.70 -3.39 16 2 C -0.10 -3.73 4.75 30.59 0.15 -3.59 16 3 C 0.15 5.61 2.13 44.85 0.10 5.70 16 4 H 0.08 2.66 6.73 -2.39 -0.02 2.64 16 5 N -0.70 -25.97 4.66 -442.20 -2.06 -28.03 16 6 C 0.51 19.31 7.06 88.11 0.62 19.93 16 7 O -0.62 -27.76 17.92 -3.03 -0.05 -27.81 16 8 C -0.13 -3.77 5.57 30.10 0.17 -3.60 16 9 C -0.11 -3.42 5.67 30.22 0.17 -3.25 16 10 C -0.11 -3.95 4.54 29.79 0.14 -3.81 16 11 C 0.01 0.39 2.15 -11.95 -0.03 0.37 16 12 H 0.03 1.72 6.81 -2.39 -0.02 1.70 16 13 C -0.50 -24.11 5.86 25.60 0.15 -23.96 16 14 H 0.06 2.85 7.76 -2.91 -0.02 2.83 16 15 C 0.02 0.97 5.45 84.65 0.46 1.43 16 16 N -0.93 -51.84 12.62 21.45 0.27 -51.57 16 17 Si 0.94 40.90 29.54 68.60 2.03 42.92 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 22 H 0.05 1.29 7.34 -2.38 -0.02 1.28 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.08 3.13 6.61 -2.39 -0.02 3.11 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.39 14.37 8.07 -92.70 -0.75 13.62 16 27 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 28 H 0.11 2.74 6.79 -2.38 -0.02 2.73 16 29 H 0.03 1.26 7.86 -2.39 -0.02 1.25 16 30 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.06 2.10 7.89 -2.39 -0.02 2.09 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -59.95 261.97 3.15 -56.80 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.34 Total: 21.88 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 2.63 Total: -14.18 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.79 Total: -79.60 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -59.95 3.15 -56.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.949 kcal (2) G-P(sol) polarization free energy of solvation -59.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds