Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46650 * 2 1 4 4 C 1.53000 * 109.47034 * 119.99795 * 2 1 3 5 5 C 1.53004 * 109.46825 * 174.16644 * 4 2 1 6 6 H 1.08998 * 110.28686 * 56.45263 * 5 4 2 7 7 N 1.46760 * 110.24147 * 178.42824 * 5 4 2 8 8 C 1.34425 * 111.30075 * 101.98627 * 7 5 4 9 9 O 1.21283 * 124.94141 * 180.44398 * 8 7 5 10 10 C 1.51281 * 110.11522 * 0.40118 * 8 7 5 11 11 C 1.54483 * 110.24457 * 294.47525 * 5 4 2 12 12 H 1.08996 * 110.96869 * 24.56937 * 11 5 4 13 13 C 1.50698 * 110.97052 * 148.30107 * 11 5 4 14 14 H 1.08003 * 119.99822 * 359.97438 * 13 11 5 15 15 C 1.37875 * 120.00070 * 179.97438 * 13 11 5 16 16 N 1.31514 * 119.99916 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99946 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47396 * 270.00291 * 17 15 13 19 19 H 1.48503 * 109.47238 * 30.00093 * 17 15 13 20 20 H 1.48505 * 109.47149 * 149.99894 * 17 15 13 21 21 H 1.08995 * 109.47774 * 299.99849 * 1 2 3 22 22 H 1.09005 * 109.47388 * 60.00342 * 1 2 3 23 23 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47066 * 240.00331 * 2 1 3 25 25 H 1.08997 * 109.46920 * 65.88534 * 3 2 1 26 26 H 1.09002 * 109.46582 * 185.87972 * 3 2 1 27 27 H 1.08993 * 109.47186 * 305.88017 * 3 2 1 28 28 H 1.08997 * 109.46918 * 54.17018 * 4 2 1 29 29 H 1.08997 * 109.47226 * 294.16694 * 4 2 1 30 30 H 0.97003 * 124.35179 * 281.95917 * 7 5 4 31 31 H 1.09005 * 110.48725 * 257.57749 * 10 8 7 32 32 H 1.09000 * 110.48303 * 134.93134 * 10 8 7 33 33 H 0.97003 * 119.99932 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5630 -0.8494 1.1781 6 1 4.0199 0.1332 1.0607 7 7 4.0743 -1.5062 2.3868 8 6 4.3697 -2.7967 2.1536 9 8 4.8017 -3.5709 2.9811 10 6 4.0838 -3.1430 0.7090 11 6 3.9677 -1.7706 0.0059 12 1 3.1934 -1.7890 -0.7611 13 6 5.2917 -1.3502 -0.5782 14 1 5.8185 -0.5020 -0.1666 15 6 5.8306 -2.0484 -1.6380 16 7 5.1893 -3.0816 -2.1388 17 14 7.4714 -1.5268 -2.3624 18 1 7.2419 -0.5420 -3.4499 19 1 8.3063 -0.9074 -1.3019 20 1 8.1708 -2.7164 -2.9112 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.7651 1.9251 0.9380 26 1 3.1248 1.4444 -0.1053 27 1 1.5932 1.9859 -0.8326 28 1 1.5939 -1.7143 1.3030 29 1 1.7645 -0.1506 2.1361 30 1 4.1853 -1.0656 3.2439 31 1 3.1469 -3.6941 0.6270 32 1 4.9055 -3.7203 0.2853 33 1 4.3370 -3.3522 -1.7628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -69.426367 kcal Electronic energy + Delta-G solvation = -14649.713663 eV Core-core repulsion = 12287.983001 eV Total energy + Delta-G solvation = -2361.730662 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71109 -36.84618 -34.84372 -33.14093 -29.66434 -28.46010 -26.91878 -25.64229 -23.03643 -20.92634 -19.66876 -19.02473 -17.27422 -16.42445 -15.20832 -14.56605 -14.26521 -13.82925 -13.70766 -13.03463 -13.00996 -12.72222 -12.12898 -11.95935 -11.83914 -11.54324 -11.29689 -10.77790 -10.69806 -10.61310 -10.44379 -10.29564 -10.15795 -9.58579 -9.07510 -8.71484 -8.41980 -8.28608 -6.44949 -4.19559 3.39260 3.42955 3.44693 3.58942 4.11290 4.46070 5.11029 5.18608 5.22111 5.26500 5.48572 5.63401 5.77893 5.86632 5.96836 6.02160 6.02695 6.08969 6.25913 6.30261 6.38213 6.42421 6.48451 6.69789 6.72152 7.08221 7.30730 7.59760 7.75874 8.04234 8.30838 8.74711 9.05787 9.52013 10.93360 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.012431 C = 0.009392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.489499 B = 2251.905179 C = 2980.683403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.135 3.865 6 H 0.081 0.919 7 N -0.727 5.727 8 C 0.531 3.469 9 O -0.568 6.568 10 C -0.158 4.158 11 C 0.035 3.965 12 H 0.049 0.951 13 C -0.594 4.594 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.905 5.905 17 Si 1.068 2.932 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.284 1.284 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.394 0.606 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 7.198 3.058 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.160 4.160 5 C 0.030 3.970 6 H 0.099 0.901 7 N -0.379 5.379 8 C 0.319 3.681 9 O -0.447 6.447 10 C -0.199 4.199 11 C 0.017 3.983 12 H 0.067 0.933 13 C -0.632 4.632 14 H 0.071 0.929 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.896 3.104 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.209 1.209 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.808 6.360 2.187 8.886 hybrid contribution -1.102 0.636 1.621 2.061 sum -6.910 6.996 3.807 10.545 Atomic orbital electron populations 1.21837 0.95905 1.01346 1.01092 1.21121 0.94781 0.96538 0.99126 1.21858 1.02049 0.95756 1.00694 1.22011 0.96326 1.00254 0.97396 1.21905 0.91720 0.97987 0.85347 0.90090 1.46284 1.66223 1.12229 1.13160 1.21220 0.74500 0.81530 0.90808 1.90620 1.47429 1.53797 1.52896 1.22660 1.02520 1.02310 0.92420 1.19893 0.98374 0.88563 0.91519 0.93317 1.21876 1.05250 1.17268 1.18833 0.92936 1.25774 1.03922 0.94016 0.94456 1.70784 1.16347 1.24773 1.42155 0.83540 0.74978 0.75996 0.75838 1.21343 1.21508 1.20928 0.93271 0.92953 0.92962 0.89797 0.93478 0.91706 0.93168 0.92201 0.92739 0.76973 0.91035 0.88103 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.10 -1.39 2.81 -90.61 -0.25 -1.64 16 3 C -0.15 -1.95 8.83 37.16 0.33 -1.62 16 4 C -0.12 -1.86 4.50 -26.73 -0.12 -1.98 16 5 C 0.14 2.50 2.94 -67.01 -0.20 2.30 16 6 H 0.08 1.50 6.26 -51.93 -0.33 1.17 16 7 N -0.73 -13.85 5.88 -52.76 -0.31 -14.16 16 8 C 0.53 12.07 8.43 -10.86 -0.09 11.98 16 9 O -0.57 -14.49 18.03 5.56 0.10 -14.39 16 10 C -0.16 -3.63 5.47 -26.74 -0.15 -3.77 16 11 C 0.04 0.79 1.94 -90.14 -0.18 0.61 16 12 H 0.05 1.12 5.89 -51.93 -0.31 0.81 16 13 C -0.59 -15.35 8.48 -34.44 -0.29 -15.64 16 14 H 0.05 1.37 7.63 -52.48 -0.40 0.97 16 15 C 0.02 0.63 5.15 -17.82 -0.09 0.54 16 16 N -0.91 -25.60 13.14 55.43 0.73 -24.88 16 17 Si 1.07 24.33 29.90 -169.99 -5.08 19.24 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.39 6.27 -51.93 -0.33 1.07 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.96 6.82 -51.93 -0.35 0.60 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.39 6.47 8.96 -40.82 -0.37 6.10 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.10 2.62 6.90 -51.93 -0.36 2.26 16 33 H 0.27 7.53 6.28 -40.82 -0.26 7.27 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -29.65 266.17 -6.12 -35.77 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.87 Total: 5.02 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.70 Total: -10.62 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.42 Total: -39.03 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.39 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.65 -6.12 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds