Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46650 * 2 1 4 4 C 1.53000 * 109.47034 * 119.99795 * 2 1 3 5 5 C 1.53004 * 109.46825 * 174.16644 * 4 2 1 6 6 H 1.08998 * 110.28686 * 56.45263 * 5 4 2 7 7 N 1.46760 * 110.24147 * 178.42824 * 5 4 2 8 8 C 1.34425 * 111.30075 * 101.98627 * 7 5 4 9 9 O 1.21283 * 124.94141 * 180.44398 * 8 7 5 10 10 C 1.51281 * 110.11522 * 0.40118 * 8 7 5 11 11 C 1.54483 * 110.24457 * 294.47525 * 5 4 2 12 12 H 1.08996 * 110.96869 * 24.56937 * 11 5 4 13 13 C 1.50698 * 110.97052 * 148.30107 * 11 5 4 14 14 H 1.08003 * 119.99822 * 359.97438 * 13 11 5 15 15 C 1.37875 * 120.00070 * 179.97438 * 13 11 5 16 16 N 1.31514 * 119.99916 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99946 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47396 * 270.00291 * 17 15 13 19 19 H 1.48503 * 109.47238 * 30.00093 * 17 15 13 20 20 H 1.48505 * 109.47149 * 149.99894 * 17 15 13 21 21 H 1.08995 * 109.47774 * 299.99849 * 1 2 3 22 22 H 1.09005 * 109.47388 * 60.00342 * 1 2 3 23 23 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47066 * 240.00331 * 2 1 3 25 25 H 1.08997 * 109.46920 * 65.88534 * 3 2 1 26 26 H 1.09002 * 109.46582 * 185.87972 * 3 2 1 27 27 H 1.08993 * 109.47186 * 305.88017 * 3 2 1 28 28 H 1.08997 * 109.46918 * 54.17018 * 4 2 1 29 29 H 1.08997 * 109.47226 * 294.16694 * 4 2 1 30 30 H 0.97003 * 124.35179 * 281.95917 * 7 5 4 31 31 H 1.09005 * 110.48725 * 257.57749 * 10 8 7 32 32 H 1.09000 * 110.48303 * 134.93134 * 10 8 7 33 33 H 0.97003 * 119.99932 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5630 -0.8494 1.1781 6 1 4.0199 0.1332 1.0607 7 7 4.0743 -1.5062 2.3868 8 6 4.3697 -2.7967 2.1536 9 8 4.8017 -3.5709 2.9811 10 6 4.0838 -3.1430 0.7090 11 6 3.9677 -1.7706 0.0059 12 1 3.1934 -1.7890 -0.7611 13 6 5.2917 -1.3502 -0.5782 14 1 5.8185 -0.5020 -0.1666 15 6 5.8306 -2.0484 -1.6380 16 7 5.1893 -3.0816 -2.1388 17 14 7.4714 -1.5268 -2.3624 18 1 7.2419 -0.5420 -3.4499 19 1 8.3063 -0.9074 -1.3019 20 1 8.1708 -2.7164 -2.9112 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.7651 1.9251 0.9380 26 1 3.1248 1.4444 -0.1053 27 1 1.5932 1.9859 -0.8326 28 1 1.5939 -1.7143 1.3030 29 1 1.7645 -0.1506 2.1361 30 1 4.1853 -1.0656 3.2439 31 1 3.1469 -3.6941 0.6270 32 1 4.9055 -3.7203 0.2853 33 1 4.3370 -3.3522 -1.7628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = -88.705414 kcal Electronic energy + Delta-G solvation = -14650.549665 eV Core-core repulsion = 12287.983001 eV Total energy + Delta-G solvation = -2362.566665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43189 -38.45149 -36.31195 -35.05472 -31.49097 -29.91091 -27.95375 -27.48608 -24.72730 -22.48704 -21.42553 -20.36732 -19.18042 -18.16132 -16.79405 -16.21007 -15.69032 -15.64485 -15.27188 -14.63498 -14.48476 -14.32001 -13.61510 -13.44037 -13.20380 -13.00621 -12.62064 -12.54579 -12.48644 -11.97299 -11.87056 -11.74717 -11.52052 -11.11410 -10.94323 -10.64327 -10.42339 -9.93972 -8.56535 -6.30969 1.55119 1.60253 1.62936 1.78762 2.51925 2.57890 3.21213 3.60768 3.88642 4.03886 4.14868 4.20908 4.44065 4.48696 4.56264 4.71983 4.82502 4.87847 4.94827 4.99512 5.09114 5.18178 5.29910 5.39164 5.39505 5.56059 5.61884 5.97812 6.06241 6.06736 6.22672 6.65991 7.33815 7.47216 8.82988 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.012431 C = 0.009392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.489499 B = 2251.905179 C = 2980.683403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.112 4.112 5 C 0.143 3.857 6 H 0.087 0.913 7 N -0.707 5.707 8 C 0.527 3.473 9 O -0.599 6.599 10 C -0.155 4.155 11 C 0.031 3.969 12 H 0.044 0.956 13 C -0.600 4.600 14 H 0.048 0.952 15 C -0.024 4.024 16 N -0.933 5.933 17 Si 1.106 2.894 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.290 1.290 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.411 0.589 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 8.953 3.712 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.151 4.151 5 C 0.038 3.962 6 H 0.105 0.895 7 N -0.360 5.360 8 C 0.315 3.685 9 O -0.482 6.482 10 C -0.196 4.196 11 C 0.012 3.988 12 H 0.061 0.939 13 C -0.638 4.638 14 H 0.066 0.934 15 C -0.224 4.224 16 N -0.569 5.569 17 Si 0.930 3.070 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.216 1.216 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.250 0.750 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.706 8.167 2.852 10.945 hybrid contribution -0.853 0.117 1.421 1.662 sum -7.559 8.284 4.273 12.001 Atomic orbital electron populations 1.21787 0.93793 1.01719 1.02391 1.21091 0.96545 0.96728 0.97233 1.21835 1.00760 0.95256 1.02261 1.21946 0.93298 1.00741 0.99116 1.21877 0.94200 0.96813 0.83265 0.89541 1.46144 1.64783 1.10908 1.14154 1.21139 0.74566 0.82484 0.90297 1.90600 1.49148 1.54952 1.53513 1.22538 1.01999 1.02314 0.92745 1.19836 0.96886 0.89272 0.92793 0.93852 1.22208 1.06419 1.16619 1.18530 0.93414 1.26937 1.06339 0.93790 0.95295 1.70871 1.16682 1.26160 1.43227 0.83042 0.72037 0.75894 0.76053 1.19485 1.20376 1.21580 0.91575 0.92077 0.93112 0.92725 0.91483 0.93633 0.92160 0.92673 0.90047 0.74952 0.89383 0.91611 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 2 C -0.10 -2.58 2.81 -10.79 -0.03 -2.61 16 3 C -0.14 -3.46 8.83 71.98 0.64 -2.82 16 4 C -0.11 -3.16 4.50 30.60 0.14 -3.02 16 5 C 0.14 5.03 2.94 45.45 0.13 5.17 16 6 H 0.09 3.02 6.26 -2.39 -0.01 3.01 16 7 N -0.71 -25.66 5.88 -439.42 -2.58 -28.25 16 8 C 0.53 23.68 8.43 87.90 0.74 24.42 16 9 O -0.60 -30.50 18.03 -3.04 -0.05 -30.56 16 10 C -0.16 -7.17 5.47 30.59 0.17 -7.00 16 11 C 0.03 1.38 1.94 -10.48 -0.02 1.36 16 12 H 0.04 2.01 5.89 -2.39 -0.01 2.00 16 13 C -0.60 -31.03 8.48 25.60 0.22 -30.81 16 14 H 0.05 2.46 7.63 -2.91 -0.02 2.44 16 15 C -0.02 -1.29 5.15 84.65 0.44 -0.85 16 16 N -0.93 -53.73 13.14 21.45 0.28 -53.45 16 17 Si 1.11 48.88 29.90 68.60 2.05 50.93 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.78 6.27 -2.39 -0.01 1.76 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.26 6.82 -2.39 -0.02 1.24 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.41 12.42 8.96 -92.71 -0.83 11.59 16 31 H 0.09 3.69 8.14 -2.38 -0.02 3.67 16 32 H 0.07 3.52 6.90 -2.39 -0.02 3.50 16 33 H 0.26 15.08 6.28 -92.71 -0.58 14.50 16 Total: -1.00 -63.46 266.17 3.23 -60.23 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.45 Total: 19.56 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.08 Total: -18.46 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.30 Total: -81.70 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.05 Total: 50.93 kcal Total: -63.46 3.23 -60.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.477 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds