Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47153 * 2 1 4 4 C 1.53001 * 109.46641 * 240.00002 * 2 1 3 5 5 C 1.52999 * 109.47374 * 120.00524 * 2 1 3 6 6 H 1.08998 * 110.86237 * 296.25335 * 5 2 1 7 7 C 1.54853 * 110.94577 * 59.99596 * 5 2 1 8 8 O 1.44270 * 101.19192 * 141.39586 * 7 5 2 9 9 C 1.34594 * 107.67390 * 335.36019 * 8 7 5 10 10 C 1.50698 * 122.94401 * 197.19973 * 9 8 7 11 11 C 1.50694 * 109.47166 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 10 16 16 H 1.48504 * 109.47032 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46816 * 120.00323 * 15 13 11 18 18 H 1.48495 * 109.46630 * 240.00111 * 15 13 11 19 19 N 1.28643 * 114.11780 * 17.46423 * 9 8 7 20 20 H 1.08994 * 109.46670 * 299.99540 * 1 2 3 21 21 H 1.08994 * 109.47246 * 59.99849 * 1 2 3 22 22 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47312 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47582 * 300.00186 * 3 2 1 25 25 H 1.09000 * 109.47299 * 60.00018 * 3 2 1 26 26 H 1.08996 * 109.47890 * 299.99979 * 4 2 1 27 27 H 1.09000 * 109.46982 * 60.00495 * 4 2 1 28 28 H 1.09004 * 109.47027 * 179.97438 * 4 2 1 29 29 H 1.08999 * 111.07866 * 23.41267 * 7 5 2 30 30 H 1.09006 * 111.11282 * 259.38965 * 7 5 2 31 31 H 1.08998 * 109.46890 * 60.02179 * 10 9 8 32 32 H 1.09002 * 109.46875 * 300.01982 * 10 9 8 33 33 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.7448 -0.1884 2.1529 7 6 1.5429 -2.1875 1.2836 8 8 2.7046 -2.8650 1.8057 9 6 3.7820 -2.1133 1.5129 10 6 5.1902 -2.6486 1.5531 11 6 6.1545 -1.5543 1.1742 12 1 5.7848 -0.5698 0.9284 13 6 7.5091 -1.8100 1.1414 14 7 7.9593 -3.0090 1.4402 15 14 8.7039 -0.4556 0.6643 16 1 7.9494 0.7893 0.3705 17 1 9.6465 -0.2098 1.7850 18 1 9.4655 -0.8697 -0.5414 19 7 3.5049 -0.8965 1.2008 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7209 -1.2496 29 1 1.2990 -2.5423 0.2823 30 1 0.6906 -2.2973 1.9542 31 1 5.2846 -3.4758 0.8497 32 1 5.4167 -2.9999 2.5598 33 1 8.9123 -3.1887 1.4175 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -29.984140 kcal Electronic energy + Delta-G solvation = -14454.586635 eV Core-core repulsion = 12094.566316 eV Total energy + Delta-G solvation = -2360.020319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71064 -36.74545 -33.53839 -32.08016 -30.04050 -27.68510 -27.07943 -26.60074 -23.40777 -22.97810 -19.32279 -18.54896 -16.43392 -15.97065 -15.76395 -14.73232 -14.42724 -13.93273 -13.80633 -13.32705 -12.53437 -12.39687 -12.28404 -12.11201 -11.59657 -11.42948 -11.40482 -11.03624 -10.74846 -10.68447 -10.63817 -10.52151 -10.24788 -9.86888 -9.46690 -8.91013 -8.50559 -8.17938 -6.02894 -4.02264 3.09704 3.35133 3.42248 3.49638 4.03224 4.51669 4.71996 4.89748 5.00304 5.20444 5.34209 5.35912 5.43197 5.54712 5.66599 5.77770 5.89214 5.98628 5.99352 6.05333 6.23108 6.27792 6.31589 6.62000 6.64635 6.72844 7.22679 7.36424 7.39098 8.01996 8.20547 8.79078 9.10647 9.61574 11.09636 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.008958 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.940274 B = 3124.917825 C = 3636.431069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C -0.133 4.133 4 C -0.143 4.143 5 C 0.026 3.974 6 H 0.083 0.917 7 C 0.016 3.984 8 O -0.358 6.358 9 C 0.320 3.680 10 C 0.083 3.917 11 C -0.504 4.504 12 H 0.083 0.917 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.285 1.285 19 N -0.525 5.525 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 4.128 -2.683 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 C -0.190 4.190 4 C -0.201 4.201 5 C -0.084 4.084 6 H 0.101 0.899 7 C -0.061 4.061 8 O -0.262 6.262 9 C 0.096 3.904 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.101 0.899 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.211 1.211 19 N -0.260 5.260 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.649 4.646 -2.795 13.762 hybrid contribution -0.048 0.109 -0.015 0.120 sum -12.697 4.754 -2.810 13.846 Atomic orbital electron populations 1.21926 0.95008 1.01452 1.01671 1.20347 0.94148 0.96229 0.94215 1.21744 1.02857 0.94051 1.00345 1.21918 1.03070 0.99076 0.95988 1.23632 0.91650 0.94745 0.98414 0.89944 1.24615 0.88791 0.92907 0.99783 1.86983 1.15544 1.49861 1.73857 1.26958 0.91693 0.86326 0.85437 1.18186 0.79830 0.97719 0.99677 1.21224 0.90036 0.97559 1.45439 0.89913 1.25013 0.98426 0.95758 0.95515 1.69975 1.14190 1.20444 1.49477 0.86375 0.80669 0.82139 0.77923 1.19458 1.21129 1.21140 1.74950 1.08771 1.16151 1.26168 0.92757 0.92478 0.92890 0.90968 0.93421 0.93370 0.93347 0.93124 0.90850 0.90350 0.88814 0.93099 0.93156 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.25 37.16 0.31 -1.28 16 2 C -0.05 -0.70 0.64 -154.51 -0.10 -0.80 16 3 C -0.13 -1.90 8.39 37.15 0.31 -1.59 16 4 C -0.14 -2.15 8.02 37.16 0.30 -1.85 16 5 C 0.03 0.44 2.99 -66.35 -0.20 0.24 16 6 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 7 C 0.02 0.26 6.49 38.13 0.25 0.50 16 8 O -0.36 -7.37 11.17 -15.56 -0.17 -7.54 16 9 C 0.32 7.33 7.68 -13.61 -0.10 7.22 16 10 C 0.08 2.17 5.60 -29.04 -0.16 2.00 16 11 C -0.50 -14.16 8.95 -34.44 -0.31 -14.47 16 12 H 0.08 2.35 6.77 -52.49 -0.36 2.00 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 15 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 N -0.53 -11.44 8.59 -50.61 -0.43 -11.88 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 23 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.70 6.18 -51.93 -0.32 0.38 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.33 7.51 -51.93 -0.39 0.94 16 29 H 0.08 1.16 5.71 -51.93 -0.30 0.87 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 269.18 15.07 4.06 4.06 Total: -1.00 -29.50 269.18 -5.73 -35.23 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.08 Total: -2.37 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.19 Total: -8.60 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.30 Total: -37.62 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.17 Total: -7.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.50 -5.73 -35.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.245 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds