Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47153 * 2 1 4 4 C 1.53001 * 109.46641 * 240.00002 * 2 1 3 5 5 C 1.52999 * 109.47374 * 120.00524 * 2 1 3 6 6 H 1.08998 * 110.86237 * 296.25335 * 5 2 1 7 7 C 1.54853 * 110.94577 * 59.99596 * 5 2 1 8 8 O 1.44270 * 101.19192 * 141.39586 * 7 5 2 9 9 C 1.34594 * 107.67390 * 335.36019 * 8 7 5 10 10 C 1.50698 * 122.94401 * 197.19973 * 9 8 7 11 11 C 1.50694 * 109.47166 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 10 16 16 H 1.48504 * 109.47032 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46816 * 120.00323 * 15 13 11 18 18 H 1.48495 * 109.46630 * 240.00111 * 15 13 11 19 19 N 1.28643 * 114.11780 * 17.46423 * 9 8 7 20 20 H 1.08994 * 109.46670 * 299.99540 * 1 2 3 21 21 H 1.08994 * 109.47246 * 59.99849 * 1 2 3 22 22 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47312 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47582 * 300.00186 * 3 2 1 25 25 H 1.09000 * 109.47299 * 60.00018 * 3 2 1 26 26 H 1.08996 * 109.47890 * 299.99979 * 4 2 1 27 27 H 1.09000 * 109.46982 * 60.00495 * 4 2 1 28 28 H 1.09004 * 109.47027 * 179.97438 * 4 2 1 29 29 H 1.08999 * 111.07866 * 23.41267 * 7 5 2 30 30 H 1.09006 * 111.11282 * 259.38965 * 7 5 2 31 31 H 1.08998 * 109.46890 * 60.02179 * 10 9 8 32 32 H 1.09002 * 109.46875 * 300.01982 * 10 9 8 33 33 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.7448 -0.1884 2.1529 7 6 1.5429 -2.1875 1.2836 8 8 2.7046 -2.8650 1.8057 9 6 3.7820 -2.1133 1.5129 10 6 5.1902 -2.6486 1.5531 11 6 6.1545 -1.5543 1.1742 12 1 5.7848 -0.5698 0.9284 13 6 7.5091 -1.8100 1.1414 14 7 7.9593 -3.0090 1.4402 15 14 8.7039 -0.4556 0.6643 16 1 7.9494 0.7893 0.3705 17 1 9.6465 -0.2098 1.7850 18 1 9.4655 -0.8697 -0.5414 19 7 3.5049 -0.8965 1.2008 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7209 -1.2496 29 1 1.2990 -2.5423 0.2823 30 1 0.6906 -2.2973 1.9542 31 1 5.2846 -3.4758 0.8497 32 1 5.4167 -2.9999 2.5598 33 1 8.9123 -3.1887 1.4175 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -50.335183 kcal Electronic energy + Delta-G solvation = -14455.469122 eV Core-core repulsion = 12094.566316 eV Total energy + Delta-G solvation = -2360.902807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22680 -37.98168 -35.56858 -33.83503 -31.77087 -29.19041 -28.20971 -27.84628 -25.46144 -24.30741 -21.05839 -19.79020 -18.31401 -17.69975 -17.29006 -16.39105 -16.14256 -15.21879 -15.00064 -14.69218 -14.36392 -14.14415 -13.64304 -13.41210 -12.95004 -12.85968 -12.74088 -12.66598 -12.55906 -12.24710 -12.01707 -11.78439 -11.73052 -11.49338 -11.37976 -10.66060 -10.61664 -9.82737 -8.20908 -6.27486 1.37153 1.42988 1.43498 1.58196 2.37053 2.61824 3.15176 3.32193 3.66547 3.83711 3.95287 4.12760 4.26628 4.36290 4.58747 4.71972 4.77484 4.84620 4.91759 4.96483 5.05592 5.09224 5.15026 5.19408 5.25178 5.32116 5.45661 5.51123 5.64011 5.82570 6.09778 6.85598 7.12633 7.40530 8.92548 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.008958 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.940274 B = 3124.917825 C = 3636.431069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.141 4.141 5 C 0.020 3.980 6 H 0.091 0.909 7 C 0.016 3.984 8 O -0.371 6.371 9 C 0.307 3.693 10 C 0.088 3.912 11 C -0.518 4.518 12 H 0.075 0.925 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.277 1.277 19 N -0.540 5.540 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.884 5.387 -3.254 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.198 4.198 5 C -0.089 4.089 6 H 0.108 0.892 7 C -0.060 4.060 8 O -0.276 6.276 9 C 0.082 3.918 10 C 0.051 3.949 11 C -0.556 4.556 12 H 0.093 0.907 13 C -0.194 4.194 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.202 1.202 19 N -0.275 5.275 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.149 0.851 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.444 5.905 -3.366 15.964 hybrid contribution 0.421 -0.263 0.157 0.520 sum -14.024 5.642 -3.210 15.453 Atomic orbital electron populations 1.21870 0.91655 1.02681 1.03126 1.20411 0.96655 0.95467 0.92242 1.21721 1.00551 0.94620 1.01919 1.21892 1.00421 0.99936 0.97576 1.23863 0.88769 0.96021 1.00285 0.89163 1.24941 0.88059 0.91553 1.01461 1.86938 1.16197 1.50348 1.74119 1.26211 0.91207 0.87069 0.87321 1.17845 0.82265 0.96880 0.97956 1.21414 0.90901 0.97667 1.45584 0.90673 1.25860 1.00133 0.98074 0.95314 1.70078 1.14813 1.22239 1.50205 0.85341 0.78299 0.79123 0.77931 1.19259 1.20268 1.20239 1.74863 1.12708 1.15612 1.24334 0.91573 0.90844 0.91803 0.94525 0.91274 0.92402 0.92905 0.90864 0.94891 0.89034 0.85139 0.94903 0.95135 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.25 71.98 0.59 -1.84 16 2 C -0.05 -1.24 0.64 -52.18 -0.03 -1.28 16 3 C -0.13 -3.50 8.39 71.98 0.60 -2.89 16 4 C -0.14 -4.01 8.02 71.98 0.58 -3.44 16 5 C 0.02 0.66 2.99 45.41 0.14 0.79 16 6 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 7 C 0.02 0.46 6.49 72.61 0.47 0.93 16 8 O -0.37 -15.18 11.17 -78.59 -0.88 -16.06 16 9 C 0.31 14.38 7.68 88.57 0.68 15.06 16 10 C 0.09 4.79 5.60 29.10 0.16 4.95 16 11 C -0.52 -29.92 8.95 25.60 0.23 -29.69 16 12 H 0.08 4.39 6.77 -2.91 -0.02 4.37 16 13 C 0.00 0.22 5.46 84.66 0.46 0.68 16 14 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 15 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 N -0.54 -23.72 8.59 -429.28 -3.69 -27.41 16 20 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 1.03 7.15 -2.39 -0.02 1.01 16 23 H 0.04 1.22 7.91 -2.38 -0.02 1.21 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.42 6.18 -2.39 -0.01 1.41 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.19 7.51 -2.38 -0.02 1.17 16 29 H 0.09 2.47 5.71 -2.39 -0.01 2.46 16 30 H 0.13 2.91 8.14 -2.38 -0.02 2.90 16 31 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -64.74 269.18 2.70 -62.04 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.07 Total: 6.44 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.88 Total: -16.72 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.40 Total: -83.01 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.88 Total: -16.06 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.74 2.70 -62.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.706 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds