Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47548 * 2 1 4 4 C 1.53011 * 109.46987 * 240.00176 * 2 1 3 5 5 C 1.53002 * 109.47122 * 120.00647 * 2 1 3 6 6 H 1.09002 * 110.83817 * 180.69704 * 5 2 1 7 7 C 1.54853 * 110.94399 * 56.97076 * 5 2 1 8 8 O 1.44282 * 101.19075 * 218.57233 * 7 5 2 9 9 C 1.34591 * 107.66823 * 24.64173 * 8 7 5 10 10 C 1.50704 * 122.93736 * 162.80191 * 9 8 7 11 11 C 1.50698 * 109.46976 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99600 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00290 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99579 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47240 * 89.99829 * 15 13 11 17 17 H 1.48500 * 109.47060 * 209.99685 * 15 13 11 18 18 H 1.48501 * 109.47198 * 329.99317 * 15 13 11 19 19 N 1.28643 * 114.12653 * 342.80115 * 9 8 7 20 20 H 1.09000 * 109.46899 * 300.00132 * 1 2 3 21 21 H 1.08999 * 109.46920 * 59.99567 * 1 2 3 22 22 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47241 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47364 * 300.00162 * 3 2 1 25 25 H 1.09004 * 109.46551 * 60.00449 * 3 2 1 26 26 H 1.08997 * 109.46969 * 300.00394 * 4 2 1 27 27 H 1.08999 * 109.47080 * 60.00356 * 4 2 1 28 28 H 1.08999 * 109.47203 * 180.02562 * 4 2 1 29 29 H 1.08997 * 111.07738 * 336.55276 * 7 5 2 30 30 H 1.08993 * 111.07715 * 100.55551 * 7 5 2 31 31 H 1.09002 * 109.47350 * 300.02765 * 10 9 8 32 32 H 1.09005 * 109.46924 * 60.02423 * 10 9 8 33 33 H 0.97002 * 119.99764 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0400 -0.7214 1.2492 6 1 3.1296 -0.7237 1.2779 7 6 1.4813 -2.1638 1.3223 8 8 1.2305 -2.2955 2.7370 9 6 1.0526 -1.0588 3.2373 10 6 0.4078 -0.8008 4.5747 11 6 0.3624 0.6833 4.8325 12 1 0.7603 1.3709 4.1009 13 6 -0.1871 1.1632 6.0025 14 7 -0.6720 0.3259 6.8932 15 14 -0.2439 3.0029 6.3218 16 1 -1.5138 3.5587 5.7890 17 1 -0.1684 3.2541 7.7834 18 1 0.9051 3.6582 5.6469 19 7 1.4812 -0.1162 2.4739 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6768 1.9564 -0.8899 25 1 1.6768 1.9562 0.8901 26 1 1.6766 -1.7489 -1.2494 27 1 1.6767 -0.2074 -2.1393 28 1 3.1300 -0.7217 -1.2492 29 1 0.5581 -2.2560 0.7502 30 1 2.2224 -2.8887 0.9858 31 1 -0.6064 -1.2003 4.5723 32 1 0.9884 -1.2881 5.3580 33 1 -1.0589 0.6636 7.7161 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = -29.408330 kcal Electronic energy + Delta-G solvation = -14453.923121 eV Core-core repulsion = 12093.927771 eV Total energy + Delta-G solvation = -2359.995350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71203 -36.74553 -33.53649 -32.07864 -30.03928 -27.67044 -27.10961 -26.59308 -23.40563 -22.97667 -19.32046 -18.54476 -16.43483 -15.96889 -15.76537 -14.72715 -14.42993 -13.93585 -13.81713 -13.34070 -12.52407 -12.40476 -12.27804 -12.09949 -11.60826 -11.43643 -11.39168 -11.01004 -10.77325 -10.68016 -10.64300 -10.50796 -10.23957 -9.86795 -9.47858 -8.91601 -8.49911 -8.17766 -6.02632 -4.02106 3.09625 3.36542 3.42025 3.48243 4.03283 4.51701 4.72183 4.89868 5.00440 5.19506 5.34166 5.36059 5.43017 5.54502 5.66504 5.78756 5.88920 5.98557 5.99925 6.05867 6.23125 6.27717 6.31005 6.62321 6.63915 6.73349 7.22755 7.36449 7.39148 8.02033 8.20671 8.79142 9.10353 9.61647 11.09835 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.008956 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.715425 B = 3125.518418 C = 3636.965142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.132 4.132 4 C -0.142 4.142 5 C 0.026 3.974 6 H 0.083 0.917 7 C 0.015 3.985 8 O -0.358 6.358 9 C 0.320 3.680 10 C 0.084 3.916 11 C -0.505 4.505 12 H 0.082 0.918 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.272 1.272 19 N -0.525 5.525 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -2.373 -13.273 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.050 4.050 3 C -0.190 4.190 4 C -0.200 4.200 5 C -0.084 4.084 6 H 0.101 0.899 7 C -0.062 4.062 8 O -0.262 6.262 9 C 0.096 3.904 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.100 0.900 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.730 3.270 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.197 1.197 19 N -0.261 5.261 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.723 -1.691 -13.108 13.731 hybrid contribution 0.057 0.076 -0.099 0.137 sum 3.780 -1.615 -13.207 13.832 Atomic orbital electron populations 1.21938 0.94416 1.01297 1.02479 1.20350 0.95959 0.96031 0.92610 1.21737 1.00173 0.94947 1.02100 1.21921 1.00867 1.00015 0.97222 1.23633 0.99866 0.90922 0.94010 0.89929 1.24638 1.01199 0.98884 0.81486 1.86984 1.85793 1.31620 1.21842 1.26962 0.88034 0.78066 0.97329 1.18183 0.95448 0.99185 0.82557 1.21180 1.38867 0.90480 1.03808 0.89976 1.25007 0.95445 0.98276 0.95953 1.69965 1.40574 1.34287 1.09259 0.86423 0.78509 0.85048 0.77043 1.20725 1.21389 1.19668 1.74952 1.19566 1.28089 1.03472 0.90971 0.93065 0.93258 0.93368 0.93487 0.90869 0.92925 0.92489 0.92748 0.90245 0.88837 0.93108 0.93157 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.01 37.16 0.30 -1.84 16 2 C -0.05 -0.70 0.65 -154.50 -0.10 -0.80 16 3 C -0.13 -1.91 8.37 37.16 0.31 -1.60 16 4 C -0.14 -1.58 8.29 37.16 0.31 -1.28 16 5 C 0.03 0.44 2.99 -66.35 -0.20 0.24 16 6 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 7 C 0.01 0.24 6.56 38.13 0.25 0.49 16 8 O -0.36 -7.37 11.17 -15.55 -0.17 -7.54 16 9 C 0.32 7.33 7.68 -13.61 -0.10 7.23 16 10 C 0.08 2.18 5.60 -29.03 -0.16 2.01 16 11 C -0.51 -14.18 8.95 -34.44 -0.31 -14.49 16 12 H 0.08 2.33 6.77 -52.49 -0.36 1.98 16 13 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 15 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 N -0.53 -11.45 8.56 -50.61 -0.43 -11.88 16 20 H 0.07 1.30 7.57 -51.93 -0.39 0.90 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.70 6.03 -51.93 -0.31 0.38 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.25 7.81 -51.93 -0.41 0.85 16 26 H 0.05 0.54 7.35 -51.93 -0.38 0.16 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.18 5.68 -51.93 -0.30 0.88 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -29.47 269.23 -5.72 -35.19 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.08 Total: -2.34 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.20 Total: -8.61 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.30 Total: -37.62 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.17 Total: -7.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.47 -5.72 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.786 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds