Wall clock time and date at job start Mon Mar 30 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 C 1.50698 * 109.47050 * 119.99988 * 2 1 3 5 5 O 1.21285 * 120.00170 * 332.43416 * 4 2 1 6 6 N 1.34781 * 119.99924 * 152.43745 * 4 2 1 7 7 C 1.47576 * 134.49120 * 174.60774 * 6 4 2 8 8 C 1.53948 * 86.11663 * 204.63292 * 7 6 4 9 9 C 1.52995 * 113.74325 * 221.94020 * 8 7 6 10 10 C 1.50699 * 109.47042 * 183.07642 * 9 8 7 11 11 H 1.07994 * 119.99998 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99991 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99828 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46934 * 90.00319 * 14 12 10 16 16 H 1.48498 * 109.46603 * 209.99725 * 14 12 10 17 17 H 1.48497 * 109.47318 * 329.99747 * 14 12 10 18 18 C 1.47927 * 134.50164 * 354.59763 * 6 4 2 19 19 H 1.09004 * 109.46635 * 300.00145 * 1 2 3 20 20 H 1.09004 * 109.46759 * 59.99869 * 1 2 3 21 21 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46937 * 240.00219 * 2 1 3 23 23 H 1.09000 * 109.47129 * 304.77274 * 3 2 1 24 24 H 1.08997 * 109.47058 * 64.77225 * 3 2 1 25 25 H 1.09005 * 109.47334 * 184.77257 * 3 2 1 26 26 H 1.08999 * 113.77089 * 90.33419 * 7 6 4 27 27 H 1.08996 * 113.77254 * 318.93352 * 7 6 4 28 28 H 1.09005 * 113.73779 * 90.73584 * 8 7 6 29 29 H 1.08998 * 109.47061 * 303.07662 * 9 8 7 30 30 H 1.09002 * 109.47535 * 63.07539 * 9 8 7 31 31 H 0.97003 * 119.99805 * 180.02562 * 13 12 10 32 32 H 1.09001 * 113.86401 * 41.10490 * 18 6 4 33 33 H 1.08990 * 113.77202 * 269.61166 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.3566 -0.7305 2.2374 6 7 3.2326 -1.3234 1.2119 7 6 4.0613 -2.0054 2.2248 8 6 5.2612 -1.6580 1.3251 9 6 6.2747 -2.7953 1.1836 10 6 7.4401 -2.3288 0.3498 11 1 7.4560 -1.3219 -0.0405 12 6 8.4860 -3.1874 0.0852 13 7 9.5028 -2.7804 -0.6429 14 14 8.4580 -4.9292 0.7597 15 1 7.7979 -5.8288 -0.2202 16 1 9.8495 -5.3907 0.9961 17 1 7.7046 -4.9525 2.0391 18 6 4.2483 -1.5829 0.1683 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6086 1.9804 -0.8441 24 1 1.7483 1.9310 0.9296 25 1 3.1268 1.4437 -0.0855 26 1 3.8667 -3.0750 2.3039 27 1 4.0766 -1.5020 3.1914 28 1 5.7263 -0.7015 1.5640 29 1 6.6296 -3.0908 2.1709 30 1 5.7990 -3.6477 0.6985 31 1 10.2384 -3.3845 -0.8293 32 1 4.4128 -0.7422 -0.5058 33 1 4.1085 -2.5285 -0.3553 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:08 Heat of formation + Delta-G solvation = -22.250854 kcal Electronic energy + Delta-G solvation = -13969.136111 eV Core-core repulsion = 11609.451132 eV Total energy + Delta-G solvation = -2359.684979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03271 -37.79543 -34.30769 -33.09942 -30.84604 -27.68153 -27.13232 -25.84273 -23.53694 -21.85030 -19.56825 -18.41428 -17.01661 -16.71750 -15.69092 -15.34797 -14.57227 -14.05926 -13.77365 -13.36252 -12.79874 -12.65934 -12.40310 -12.26619 -12.15503 -12.01951 -11.59321 -11.20797 -11.10423 -11.03575 -10.74499 -10.24627 -10.06256 -9.72253 -9.25024 -9.22191 -8.60777 -8.35830 -6.11062 -4.10072 2.84372 3.12360 3.25960 3.34813 3.36959 4.38939 4.53818 4.83347 4.99540 5.02711 5.24788 5.33152 5.52894 5.54791 5.57693 5.70364 5.71863 5.77030 5.82059 5.93103 5.97855 6.10896 6.13265 6.24007 6.47643 6.64316 7.11844 7.23564 7.68570 8.02267 8.39724 8.44784 8.93087 9.50865 11.02063 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.055088 B = 0.006531 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.152523 B = 4286.354479 C = 4543.754821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.534 3.466 5 O -0.557 6.557 6 N -0.645 5.645 7 C 0.101 3.899 8 C -0.095 4.095 9 C -0.007 4.007 10 C -0.521 4.521 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.110 3.890 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 3.596 0.148 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.324 3.676 5 O -0.436 6.436 6 N -0.379 5.379 7 C -0.021 4.021 8 C -0.114 4.114 9 C -0.045 4.045 10 C -0.559 4.559 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.012 4.012 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.174 3.633 0.608 13.679 hybrid contribution 0.197 -1.039 0.157 1.069 sum -12.976 2.594 0.764 13.255 Atomic orbital electron populations 1.21645 0.92821 1.02323 1.02279 1.21202 0.97709 0.97550 0.96684 1.21702 1.01651 0.93753 1.02569 1.20375 0.78865 0.78552 0.89794 1.90646 1.55499 1.62385 1.35038 1.50380 1.17749 1.54954 1.14855 1.23406 0.87602 0.97208 0.93918 1.23041 0.93447 1.01974 0.92984 1.19568 0.94346 0.93019 0.97517 1.21062 1.02199 1.00774 1.31841 0.90867 1.25021 0.95274 0.98458 0.94606 1.69906 1.09120 1.36314 1.38658 0.86810 0.77340 0.85177 0.80154 1.20297 1.21376 1.18953 1.23452 0.83688 1.01192 0.92878 0.91585 0.92039 0.92601 0.89353 0.91525 0.92141 0.91889 0.90191 0.90833 0.88641 0.95785 0.96501 0.92665 0.90325 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.76 37.16 0.33 -1.18 16 2 C -0.11 -1.38 3.09 -91.77 -0.28 -1.67 16 3 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 4 C 0.53 8.85 7.14 -10.98 -0.08 8.77 16 5 O -0.56 -11.04 16.87 5.55 0.09 -10.94 16 6 N -0.64 -10.57 3.62 -178.07 -0.64 -11.22 16 7 C 0.10 1.66 8.41 -2.97 -0.02 1.63 16 8 C -0.10 -1.71 3.76 -89.69 -0.34 -2.05 16 9 C -0.01 -0.15 3.88 -27.89 -0.11 -0.25 16 10 C -0.52 -13.77 9.66 -34.44 -0.33 -14.10 16 11 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 12 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 13 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 14 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 18 C 0.11 1.74 7.99 -2.77 -0.02 1.72 16 19 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.75 8.13 -51.93 -0.42 1.33 16 29 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 30 H 0.02 0.36 7.30 -51.93 -0.38 -0.02 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.34 7.92 -51.93 -0.41 0.92 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -30.78 277.65 -6.25 -37.02 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.37 Total: -2.60 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.62 Total: -6.54 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.13 Total: -37.16 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.78 -6.25 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.774 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds