Wall clock time and date at job start Mon Mar 30 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 H 1.09001 * 109.47158 * 184.96892 * 3 2 1 5 5 C 1.50697 * 109.47523 * 304.97410 * 3 2 1 6 6 H 1.08002 * 120.00101 * 114.53532 * 5 3 2 7 7 C 1.37876 * 119.99771 * 294.53874 * 5 3 2 8 8 N 1.31512 * 119.99983 * 350.85166 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 170.85731 * 7 5 3 10 10 H 1.48498 * 109.47193 * 59.99973 * 9 7 5 11 11 H 1.48504 * 109.46763 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46907 * 299.99287 * 9 7 5 13 13 C 1.53003 * 109.46612 * 64.97364 * 3 2 1 14 14 N 1.46499 * 109.47218 * 64.99784 * 13 3 2 15 15 C 1.34777 * 119.99965 * 179.97438 * 14 13 3 16 16 O 1.21281 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00097 * 180.02562 * 15 14 13 18 18 C 1.53005 * 117.49951 * 248.74942 * 17 15 14 19 19 C 1.53001 * 117.49884 * 180.09207 * 17 15 14 20 20 H 1.09004 * 109.46525 * 294.80535 * 1 2 3 21 21 H 1.08993 * 109.47571 * 174.80889 * 1 2 3 22 22 H 1.08999 * 109.47283 * 54.80304 * 1 2 3 23 23 H 1.08999 * 109.47629 * 120.01141 * 2 1 3 24 24 H 1.09005 * 109.46675 * 240.00469 * 2 1 3 25 25 H 0.97002 * 119.99629 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47084 * 184.99973 * 13 3 2 27 27 H 1.09002 * 109.47596 * 304.99715 * 13 3 2 28 28 H 0.96997 * 120.00161 * 0.02562 * 14 13 3 29 29 H 1.09000 * 115.55073 * 34.41753 * 17 15 14 30 30 H 1.09002 * 117.49498 * 359.97438 * 18 17 15 31 31 H 1.08997 * 117.49878 * 145.01903 * 18 17 15 32 32 H 1.09007 * 117.49420 * 214.97368 * 19 17 15 33 33 H 1.08998 * 117.49928 * 359.97280 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 -0.0890 5 6 1.4397 2.1876 -1.1642 6 1 0.7593 3.0076 -0.9875 7 6 1.7591 1.8226 -2.4548 8 7 2.7185 0.9500 -2.6731 9 14 0.8290 2.5676 -3.8934 10 1 1.0023 4.0424 -3.8844 11 1 1.3599 2.0151 -5.1654 12 1 -0.6139 2.2378 -3.7739 13 6 1.6347 2.1266 1.3071 14 7 2.3136 1.4754 2.4302 15 6 2.1070 1.9132 3.6880 16 8 1.3587 2.8460 3.8902 17 6 2.8058 1.2437 4.8432 18 6 1.9454 0.4368 5.8177 19 6 2.5282 1.7856 6.2468 20 1 -0.3632 0.4312 0.9329 21 1 -0.3634 -1.0234 -0.0930 22 1 -0.3634 0.5923 -0.8398 23 1 1.8934 -0.5140 0.8898 24 1 1.8933 -0.5138 -0.8901 25 1 2.9434 0.6935 -3.5811 26 1 1.9197 3.1781 1.2705 27 1 0.5556 2.0472 1.4395 28 1 2.9123 0.7296 2.2684 29 1 3.8105 0.8756 4.6354 30 1 0.8738 0.3906 5.6234 31 1 2.3841 -0.4618 6.2512 32 1 3.3502 1.7737 6.9626 33 1 1.8404 2.6267 6.3346 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:13 Heat of formation + Delta-G solvation = -34.234907 kcal Electronic energy + Delta-G solvation = -14057.856007 eV Core-core repulsion = 11697.651361 eV Total energy + Delta-G solvation = -2360.204646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51125 -36.56041 -35.51827 -33.21192 -31.32171 -28.10907 -25.49228 -23.58586 -22.72245 -22.40269 -19.68754 -19.02964 -17.24688 -15.97188 -15.32389 -15.00463 -14.73044 -14.35649 -13.62497 -13.39719 -13.11348 -12.34573 -12.13417 -11.62121 -11.56814 -11.38872 -10.89439 -10.75362 -10.59019 -10.56976 -10.44098 -9.98780 -9.68559 -9.48127 -9.15361 -8.94825 -8.43287 -8.27691 -6.08079 -4.08286 2.86717 3.30645 3.35354 3.38366 3.67707 3.98300 4.41936 4.81103 4.93108 4.97045 5.26613 5.32648 5.56350 5.76000 5.95694 6.12837 6.17564 6.26376 6.39728 6.49507 6.69636 6.72128 6.92731 7.01855 7.32758 7.44024 7.68417 7.74698 7.95141 8.09885 8.33675 8.72638 8.93269 9.54174 11.01734 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.057798 B = 0.006683 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.333500 B = 4188.771236 C = 4299.932567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.037 3.963 4 H 0.038 0.962 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.123 3.877 14 N -0.714 5.714 15 C 0.532 3.468 16 O -0.555 6.555 17 C -0.192 4.192 18 C -0.155 4.155 19 C -0.151 4.151 20 H 0.033 0.967 21 H 0.023 0.977 22 H 0.067 0.933 23 H 0.017 0.983 24 H 0.071 0.929 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.398 0.602 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -3.162 11.392 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.018 3.982 4 H 0.056 0.944 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.001 3.999 14 N -0.363 5.363 15 C 0.318 3.682 16 O -0.434 6.434 17 C -0.213 4.213 18 C -0.193 4.193 19 C -0.189 4.189 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.036 0.964 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.361 -2.581 11.339 11.635 hybrid contribution -0.087 -0.082 -1.054 1.061 sum 0.274 -2.663 10.285 10.628 Atomic orbital electron populations 1.21689 0.97712 0.98663 1.01232 1.21446 0.94757 0.99172 0.99194 1.18959 0.97449 0.91982 0.89829 0.94414 1.20862 1.27445 1.16505 0.90104 0.92486 1.24885 0.94654 0.95216 0.98709 1.69936 1.28259 1.33377 1.21007 0.86721 0.80492 0.79518 0.81723 1.20235 1.21338 1.20140 1.21791 0.96199 0.96438 0.85441 1.46238 1.47767 1.35958 1.06385 1.19606 0.81614 0.83321 0.83682 1.90653 1.38417 1.29256 1.85042 1.22259 1.01322 1.06535 0.91201 1.22907 0.99701 0.95424 1.01237 1.22916 1.03457 0.97933 0.94557 0.94803 0.95789 0.91436 0.96399 0.91003 0.92899 0.92710 0.92374 0.76822 0.86134 0.88364 0.88072 0.88276 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.33 37.16 0.35 -2.49 16 2 C -0.11 -2.37 5.42 -26.73 -0.14 -2.51 16 3 C 0.04 0.86 1.98 -91.77 -0.18 0.68 16 4 H 0.04 0.96 8.09 -51.93 -0.42 0.54 16 5 C -0.51 -13.43 6.89 -34.44 -0.24 -13.67 16 6 H 0.06 1.51 7.76 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.24 -17.82 -0.09 1.71 16 8 N -0.89 -24.62 12.17 55.43 0.67 -23.95 16 9 Si 0.89 20.87 29.55 -169.99 -5.02 15.84 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.12 2.64 4.87 -4.04 -0.02 2.62 16 14 N -0.71 -12.80 5.23 -60.29 -0.32 -13.11 16 15 C 0.53 9.40 7.61 -10.99 -0.08 9.31 16 16 O -0.55 -11.87 16.26 5.56 0.09 -11.77 16 17 C -0.19 -2.48 6.19 -91.77 -0.57 -3.05 16 18 C -0.16 -1.70 10.24 -26.69 -0.27 -1.97 16 19 C -0.15 -1.73 10.05 -26.69 -0.27 -2.00 16 20 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.54 6.88 -51.93 -0.36 1.18 16 23 H 0.02 0.34 7.07 -51.93 -0.37 -0.03 16 24 H 0.07 1.77 7.01 -51.93 -0.36 1.40 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.29 6.46 -51.93 -0.34 0.96 16 28 H 0.40 6.28 7.65 -40.82 -0.31 5.97 16 29 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.39 7.67 -51.93 -0.40 0.99 16 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -29.30 274.83 -6.94 -36.24 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.98 Total: 3.98 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.52 Total: -11.37 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.36 Total: -37.06 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.30 -6.94 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.000 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds